View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12486_low_2 (Length: 308)
Name: NF12486_low_2
Description: NF12486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12486_low_2 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 11701831 - 11702118
Alignment:
| Q |
1 |
atattatggaattcaagggaatttgatatcatatctaacagggccactcaaacagagcactgcaacagctgctaagaatgtaaatgtttgggctggaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11701831 |
atattatggaattcaagggaatttgatatcatatctaacagggccactcaaacagagcactgcaacagctgctaagaatgtaaatgtttgggctggaaca |
11701930 |
T |
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| Q |
101 |
gcttctctacttcctctcttaggtgcttttgttgctgattcttttcttggacgctatcgcacaatcatacttgcttctcttatctatatcttggtcagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11701931 |
gcttctctacttcctctcttaggtgcttttgttgctgattcttttcttggacgctatcgcacaatcatacttgcttctcttatctatatcttggtcagtt |
11702030 |
T |
|
| Q |
201 |
ctgttcgtcacttctacctattttattttttgtctaaaatgaactacttctctcaaacgtcttgaatttttacgccatagttaatagt |
288 |
Q |
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| T |
11702031 |
ctgttcgtcacttctacctattttattttttgtctaaaatgaactacttctctcaaacgtcttgaatttttacgccatagttaatagt |
11702118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 11797875 - 11798063
Alignment:
| Q |
1 |
atattatggaattcaagggaatttgatatcatatctaacagggccactcaaacagagcactgcaacagctgctaagaatgtaaatgtttgggctggaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||| | ||||| |||||||||| |||||| |
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| T |
11797875 |
atattatggaattcaagggaatttgatatcatatctaacaggaccactcaaacaaagcactgcaaaagctgctgaaaatgtgaatgtttgggttggaact |
11797974 |
T |
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| Q |
101 |
gcttctctacttcctctcttaggtgcttttgttgctgattcttttcttggacgctatcgcacaatcatacttgcttctcttatctatat |
189 |
Q |
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| T |
11797975 |
gcttctctacttcctctctttggtgctttcattgctgattcttttcttggacgctaccgcacaatcatacttgcttctctcatctatat |
11798063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 11675938 - 11676136
Alignment:
| Q |
1 |
atattatggaattcaagggaatttgatatcatatctaacagggccactcaaacagagcactgcaacagctgctaagaatgtaaatgtttgggctggaaca |
100 |
Q |
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||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||||| ||| ||||||||||| |
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| T |
11675938 |
atattatgggattcaagggaacttgatatcatatctaacaggaccactcaaacaaagcactgcaactgctgctgagaatgtgaatatttgggctggagtt |
11676037 |
T |
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| Q |
101 |
gcttctctacttcctctcttaggtgcttttgttgctgattcttttcttggacgctatcgcacaatcatacttgcttctcttatctatatcttggtcagt |
199 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| |
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| T |
11676038 |
gcttctctccttcctctctttggtgcttttgttgctgattcttttcttggacgctatcgcacaatcatactcgcttctctcatttatatcttggtcagt |
11676136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 11684217 - 11684415
Alignment:
| Q |
1 |
atattatggaattcaagggaatttgatatcatatctaacagggccactcaaacagagcactgcaacagctgctaagaatgtaaatgtttgggctggaaca |
100 |
Q |
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||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||||| ||| ||||||||||| |
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| T |
11684217 |
atattatgggattcaagggaacttgatatcatatctaacaggaccactcaaacaaagcactgcaactgctgctgagaatgtgaatatttgggctggagtt |
11684316 |
T |
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| Q |
101 |
gcttctctacttcctctcttaggtgcttttgttgctgattcttttcttggacgctatcgcacaatcatacttgcttctcttatctatatcttggtcagt |
199 |
Q |
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| T |
11684317 |
gcttctctccttcctctctttggtgcttttgttgctgattcttttcttggacgctatcgcacaatcatactcgcttctctcatttatatcttggtcagt |
11684415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 11696034 - 11696228
Alignment:
| Q |
1 |
atattatggaattcaagggaatttgatatcatatctaacagggccactcaaacagagcactgcaacagctgctaagaatgtaaatgtttgggctggaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||| | ||||| ||| ||||||||||||| |
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| T |
11696034 |
atattatggaattcaagggaatttgatatcatatctaacaggaccactcaaacaaagcactgcaaaagctgctgaaaatgtgaatatttgggctggaact |
11696133 |
T |
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| Q |
101 |
gcttctctacttcctctcttaggtgcttttgttgctgattcttttcttggacgctatcgcacaatcatacttgcttctcttatctatatcttggt |
195 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| |
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| T |
11696134 |
gcttctctacttcctctctttggtgctttcattgctgattcttttcttggacgctaccgcacaatcatgcttgcttctctcatctatatattggt |
11696228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 23 - 213
Target Start/End: Original strand, 11779035 - 11779225
Alignment:
| Q |
23 |
ttgatatcatatctaacagggccactcaaacagagcactgcaacagctgctaagaatgtaaatgtttgggctggaacagcttctctacttcctctcttag |
122 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||| | |
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| T |
11779035 |
ttgatatcatatctaacagggccactcaaacaaagcactgcaactgctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctctttg |
11779134 |
T |
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| Q |
123 |
gtgcttttgttgctgattcttttcttggacgctatcgcacaatcatacttgcttctcttatctatatcttggtcagttctgttcgtcactt |
213 |
Q |
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|||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| ||||||||| |||||| |
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| T |
11779135 |
gtgcattcattgctgattcttttcttggacgctatcacacaatcatacttgcttctcttatctatgtattggttggttctgttcttcactt |
11779225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 23 - 213
Target Start/End: Original strand, 16498 - 16688
Alignment:
| Q |
23 |
ttgatatcatatctaacagggccactcaaacagagcactgcaacagctgctaagaatgtaaatgtttgggctggaacagcttctctacttcctctcttag |
122 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||| |
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| T |
16498 |
ttgatatcatatctaacaggaccactcaaacaaagcactgcaacagctgctaagaatgtgaatatttgggctggaactgcttctctacttcctctcttag |
16597 |
T |
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| Q |
123 |
gtgcttttgttgctgattcttttcttggacgctatcgcacaatcatacttgcttctcttatctatatcttggtcagttctgttcgtcactt |
213 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||| |||||| |
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| T |
16598 |
gtgctttcgttgctgattcttttcttggacgctatcacacaatcatacttgcttctcttatctatatattggttggttctgttcttcactt |
16688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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