View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12487_high_10 (Length: 264)
Name: NF12487_high_10
Description: NF12487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12487_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 15803515 - 15803382
Alignment:
| Q |
12 |
aagcagagaatattggtttgaaaggaatttccatgtttcaaccattttcaagataaaactgcgtcgtttcacaaattggatttggaatttaaggcatatg |
111 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
15803515 |
aagcagagaatattggtttgcaaggaatttccatgtttcaaccattttcaagataaaactgcgtcgtttcacaaattggatttcgagtttaaggcatat- |
15803417 |
T |
|
| Q |
112 |
tgaaatagtgagtgaaagtgaatggttataatttc |
146 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
|
|
| T |
15803416 |
tgaaatagcgagtgaaagtgaatggttataatttc |
15803382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 15803348 - 15803309
Alignment:
| Q |
207 |
ggtcccgtgtccgacacacattgatgtttgacgtagagtttg |
248 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15803348 |
ggtcccgtgtccgacaca--ttgatgtttgacgtagagtttg |
15803309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University