View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12487_high_4 (Length: 351)
Name: NF12487_high_4
Description: NF12487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12487_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 4e-75; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 17 - 167
Target Start/End: Original strand, 49301949 - 49302099
Alignment:
| Q |
17 |
accaccgatattctccaagctagtggtaaccatatgccacgataaataaagttagaacaatatagcttttacatttagatggacttttctagagtaaact |
116 |
Q |
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| T |
49301949 |
accaccgatattctccaagctagtggtaaccatatgccacgataaataaagtgagaacaatatagcttttacatttagatggacttttctagagtaaact |
49302048 |
T |
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| Q |
117 |
aggagacaaccaagcacaatgctgcatatatgcattatctggaccattcct |
167 |
Q |
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| T |
49302049 |
aggagacaaccaagcacaatgctgcatatatccattatctggaccattcct |
49302099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 285 - 337
Target Start/End: Original strand, 49302218 - 49302270
Alignment:
| Q |
285 |
atttataaatgttgttgtgaatattttcttaacatcaaaattcctgttacaca |
337 |
Q |
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| T |
49302218 |
atttataaatgttgttgtgaatattttcttaacatcaaaattcctgttacaca |
49302270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 49288246 - 49288328
Alignment:
| Q |
88 |
catttagatggactttt---ctagagtaaactaggagacaaccaagcacaatgctgcatatatgcattatctggaccattcct |
167 |
Q |
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| T |
49288246 |
catttagatggatttttttcctagagttatcgaggagacagccaagaacaatgctgcatatattctttatctagatcattcct |
49288328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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