View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12487_high_5 (Length: 350)
Name: NF12487_high_5
Description: NF12487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12487_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 11 - 334
Target Start/End: Complemental strand, 46873175 - 46872852
Alignment:
| Q |
11 |
cacagaaacaaccattgacaaaacaacatcagcaaacaaaagaacccccaaaaccatcatcatcttcaataaacctaaaccagagtaaaaacacctcttt |
110 |
Q |
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| T |
46873175 |
cacagaaacaaccattgacaaaacaacatcagcaaacaaaagaacccccaaaaccatcatcatcttcaataaacctaaaccagagtaaaaacacctcttt |
46873076 |
T |
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| Q |
111 |
tcaccctttttctttctttcaattctctgaacaacatgatttgatttagcacttgacttgataacaggagtagacggcgctattacaccgtcagaactgt |
210 |
Q |
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| T |
46873075 |
tcaccctttttctttctttcaattctctgaacaacatgatttgatttagcacttgacttgataacaggagtagacggcgctattacaccgtcagaactgt |
46872976 |
T |
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| Q |
211 |
tttcgggtgtggagaaaatggaagaatcaatggaaattggagtgatgttattgataacattgttgggttttgaagatgagaatttggttaaagaactatt |
310 |
Q |
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| T |
46872975 |
tttcgggtgtggagaaaatggaagaatcaatggaaattggagtgatgttattgttaacattgttgggttttgaagatgagaatttggttaaagaactatt |
46872876 |
T |
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| Q |
311 |
gggtatgagatcaagggttgcatt |
334 |
Q |
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| T |
46872875 |
gggtatgagatcaagggttgcatt |
46872852 |
T |
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