View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12487_low_1 (Length: 676)
Name: NF12487_low_1
Description: NF12487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12487_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 16 - 501
Target Start/End: Original strand, 7859326 - 7859811
Alignment:
| Q |
16 |
tgtgattccgtaaatctagattgcctcaaaatgaacctatattcatattatgtccattggaattgaattaataaaatatcacttcctcaaacaattcaac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7859326 |
tgtgattccgtaaatctagattgcctcaaaatgaacctatattcatattatgtccattggaattgaattaataaaatatcacttcctcaaacaattcaac |
7859425 |
T |
|
| Q |
116 |
taaaacaatgactacctcctcaaatttctccttagtacttatgttctgcttggttgccaaatcaaaaacagtatccaggtttcaaattaaaagatttttt |
215 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7859426 |
taaaacaatgactaccttctcaaatttctccttagtacttatgttctgcttggttgccaaatcaaaaacagtatccaggtttcaaattaaaagatttttt |
7859525 |
T |
|
| Q |
216 |
aaattacaagggataaatatttgcattaacatannnnnnncaaattacaaggcctgacatattttgatgttgtaggattctctagtatcaaatggatttg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7859526 |
aaattacaagggataaatatttgcattaacatatttttttcaaattacaaggcctgacatattttgatgttgtaggattctctagtatcaaatggatttg |
7859625 |
T |
|
| Q |
316 |
agcaacaaggacgtaaggacatcttgacagaagctcttgggcaacctgaacaccctggtcgtgttcgtgctgttggtcaaggtgtggggattcgagaaca |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7859626 |
agcaacaaggacgtaaggacatcttgacagaagctcttgggcaacctgaacaccctggtcgtgttcgtgctgttggtcaaggtgtggggattcgagaaca |
7859725 |
T |
|
| Q |
416 |
cttcggatcacaatttcattccacccaaactgttatcaatgatgcccagctagcagccttgaaagtagatcttactaagcaagtta |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7859726 |
cttcggatcacaatttcattccacccaaactgttatcaatgatgcccagctagcagccttgaaagtagatcttactaagcaggtta |
7859811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 151 - 501
Target Start/End: Original strand, 7860287 - 7860644
Alignment:
| Q |
151 |
tacttatgttctgcttggttgccaaatcaaaaacagtatccaggtttcaaattaaaagattttttaaattacaagggataaatatttgcattaacatann |
250 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||| || | | |
|
|
| T |
7860287 |
tacttatgttctgctcgattgccaaatcaaaaacagtatcctggtttcaaattaaaagattttttaaattacatgggatacatatttgcaccaaaagatt |
7860386 |
T |
|
| Q |
251 |
nnnnn-------caaattacaaggcctgacatattttgatgttgtaggattctctagtatcaaatggatttgagcaacaaggacgtaaggacatcttgac |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7860387 |
ttttttctctttcaaattacaaggcctgacatattttgatgttgtaggattctctagtatcaaatggatttgagcaacaaggacgtaaggacatcttgac |
7860486 |
T |
|
| Q |
344 |
agaagctcttgggcaacctgaacaccctggtcgtgttcgtgctgttggtcaaggtgtggggattcgagaacacttcggatcacaatttcattccacccaa |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7860487 |
ggaagctcttgggcaacctgaacaccctggtcgtgtttgtgctgttggtcaaggtgtggagattcgagaacacttcggatcacaatctcattccacccag |
7860586 |
T |
|
| Q |
444 |
actgttatcaatgatgcccagctagcagccttgaaagtagatcttactaagcaagtta |
501 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7860587 |
tctgttatcaatgatgcccaactagcagccttgaaagtagatcttactaagcaggtta |
7860644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 494 - 658
Target Start/End: Original strand, 7860164 - 7860328
Alignment:
| Q |
494 |
gcaagttattgctaataaggtatttattacatttgtgtctatctctatcttaatggtttaggatgttgttagatctaagaagttatgttctaaagtcatc |
593 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7860164 |
gcaagttattgctaataaggtatttattacatttgtgtctatctctatcttaatggtttaggatgttgttagatctaagaagttatgttctaaagtcatc |
7860263 |
T |
|
| Q |
594 |
aagatttccattcaaatttctcctacttatgttctgctcgattgccaaatcaaaaacaatatcct |
658 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7860264 |
aagatttccattcaaatttctcctacttatgttctgctcgattgccaaatcaaaaacagtatcct |
7860328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 278 - 472
Target Start/End: Original strand, 17790657 - 17790850
Alignment:
| Q |
278 |
tttgatgttgtaggattctctagtatcaaatggatttgagcaacaaggacgtaaggacatcttgacagaagctcttgggcaacctgaacaccctggtcgt |
377 |
Q |
| |
|
|||||||||||||||||||||||| ||| | ||||||| | | | |||||||||||||||||| | ||||| ||||||||| |||||||| ||||| | |
|
|
| T |
17790657 |
tttgatgttgtaggattctctagtgtcagacggatttgtgtgagatggacgtaaggacatcttggcggaagcccttgggcaagttgaacaccttggtcat |
17790756 |
T |
|
| Q |
378 |
gttcgtgctgttggtcaaggtgtggggattcgagaacacttcggatcacaatttcattccacccaaactgttatcaatgatgcccagctagcagc |
472 |
Q |
| |
|
||| || |||| || ||| ||||| ||||||||| |||| ||||| ||| ||||||||||| | |||||||||||||||||| ||| |||| |
|
|
| T |
17790757 |
gtttgttatgtttatcgaggagtggg-attcgagaatactttagatcaaaatctcattccaccccatatgttatcaatgatgcccaactaacagc |
17790850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 320 - 403
Target Start/End: Complemental strand, 9104438 - 9104355
Alignment:
| Q |
320 |
acaaggacgtaaggacatcttgacagaagctcttgggcaacctgaacaccctggtcgtgttcgtgctgttggtcaaggtgtggg |
403 |
Q |
| |
|
||||||||||| || |||||| | ||||| | || ||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
9104438 |
acaaggacgtagagatatcttggcggaagccatcggacaacctgaacaccctggacgtgttcgtgctgttggtggaggtgtggg |
9104355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 617 - 657
Target Start/End: Original strand, 7859461 - 7859501
Alignment:
| Q |
617 |
tacttatgttctgctcgattgccaaatcaaaaacaatatcc |
657 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||| ||||| |
|
|
| T |
7859461 |
tacttatgttctgcttggttgccaaatcaaaaacagtatcc |
7859501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 278 - 477
Target Start/End: Complemental strand, 5707425 - 5707226
Alignment:
| Q |
278 |
tttgatgttgtaggattctctagtatcaaatggatttgagcaacaaggacgtaaggacatcttgacagaagctcttgggcaacctgaacaccctggtcgt |
377 |
Q |
| |
|
|||||||||||||||||||||||| ||| | ||||||| |||| | |||||| ||||||||||| |||| ||||||||| |||||||||||||||| |
|
|
| T |
5707425 |
tttgatgttgtaggattctctagtgtcagacggatttgtgcaaaatggacgtgaggacatcttggtgaaagcccttgggcaagatgaacaccctggtcgt |
5707326 |
T |
|
| Q |
378 |
gttcgtgctgttggtcaaggtgtggggattcgagaacacttcggatcacaatttcattccacccaaactgttatcaatgatgcccagctagcagccttga |
477 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||| |||| |||||| ||| ||||||||||| ||||||||| || |||||| |||||||| |||| |
|
|
| T |
5707325 |
gttcgtgctgttggtcgaggtgtgggaattcgagaatactttggatcaaaatctcattccaccccgtctgttatcagtggtgcccaactagcagcattga |
5707226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 278 - 477
Target Start/End: Original strand, 2887996 - 2888195
Alignment:
| Q |
278 |
tttgatgttgtaggattctctagtatcaaatggatttgagcaacaaggacgtaaggacatcttgacagaagctcttgggcaacctgaacaccctggtcgt |
377 |
Q |
| |
|
|||||||||||||||||||||||| ||| | ||||||| |||| | |||||| ||||||||||| |||| ||||||||| |||||||||||||||| |
|
|
| T |
2887996 |
tttgatgttgtaggattctctagtgtcagacggatttgtgcaaaatggacgtgaggacatcttggtgaaagcccttgggcaagatgaacaccctggtcgt |
2888095 |
T |
|
| Q |
378 |
gttcgtgctgttggtcaaggtgtggggattcgagaacacttcggatcacaatttcattccacccaaactgttatcaatgatgcccagctagcagccttga |
477 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||| |||| |||||| ||| ||||||||||| ||||||||| || |||||| |||||||| |||| |
|
|
| T |
2888096 |
gttcgtgctgttggtcgaggtgtgggaattcgagaatactttggatcaaaatctcattccaccccgtctgttatcagtggtgcccaactagcagcattga |
2888195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 278 - 477
Target Start/End: Complemental strand, 16184052 - 16183853
Alignment:
| Q |
278 |
tttgatgttgtaggattctctagtatcaaatggatttgagcaacaaggacgtaaggacatcttgacagaagctcttgggcaacctgaacaccctggtcgt |
377 |
Q |
| |
|
|||||||||||||||||||||||| ||| | ||||||| |||| | |||||| ||||||||||| |||| ||||||||| |||||||||||||||| |
|
|
| T |
16184052 |
tttgatgttgtaggattctctagtgtcagacggatttgtgcaaaatggacgtgaggacatcttggtgaaagcccttgggcaagatgaacaccctggtcgt |
16183953 |
T |
|
| Q |
378 |
gttcgtgctgttggtcaaggtgtggggattcgagaacacttcggatcacaatttcattccacccaaactgttatcaatgatgcccagctagcagccttga |
477 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||| |||| |||||| ||| ||||||||||| ||||||||| || |||||| |||||||| |||| |
|
|
| T |
16183952 |
gttcgtgctgttggtcgaggtgtgggaattcgagaatactttggatcaaaatctcattccaccccgtctgttatcagtggtgcccaactagcagcattga |
16183853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 276 - 477
Target Start/End: Complemental strand, 8355114 - 8354913
Alignment:
| Q |
276 |
attttgatgttgtaggattctctagtatcaaatggatttgagcaacaaggacgtaaggacatcttgacagaagctcttgggcaacctgaacaccctggtc |
375 |
Q |
| |
|
|||||| ||||||||||||||||| | ||| | ||||||| || | | |||||| |||||||| || |||| ||||||||| ||||||||||||||| |
|
|
| T |
8355114 |
attttgttgttgtaggattctctattgtcagacggatttgtgcgaaatggacgtgaggacatcatggtgaaagcccttgggcaaactgaacaccctggtc |
8355015 |
T |
|
| Q |
376 |
gtgttcgtgctgttggtcaaggtgtggggattcgagaacacttcggatcacaatttcattccacccaaactgttatcaatgatgcccagctagcagcctt |
475 |
Q |
| |
|
||||||||| |||||||| ||||||||| ||||||||| |||| |||||| ||| |||||| |||| ||||||||| ||| ||||| |||||| |||| |
|
|
| T |
8355014 |
gtgttcgtgttgttggtcgaggtgtgggaattcgagaatactttggatcaaaatatcattcaaccccgtctgttatcagtgaggcccaactagcaacctt |
8354915 |
T |
|
| Q |
476 |
ga |
477 |
Q |
| |
|
|| |
|
|
| T |
8354914 |
ga |
8354913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 409
Target Start/End: Complemental strand, 39565438 - 39565349
Alignment:
| Q |
320 |
acaaggacgtaaggacatcttgacagaagctcttgggcaacctgaacaccctggtcgtgttcgtgctgttggtcaaggtgtggggattcg |
409 |
Q |
| |
|
|||||||||||| || || ||| ||||||| |||| ||||||| ||| ||||| |||||||| |||||||| ||||||||| ||||| |
|
|
| T |
39565438 |
acaaggacgtaaagatattttggcagaagccattggcaaacctgagcactctggttttgttcgtggtgttggtcgaggtgtgggtattcg |
39565349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 37834037 - 37834140
Alignment:
| Q |
16 |
tgtgattccgtaaatctagattgcctcaaaatgaacctatattcatattatgtccattggaattgaattaataaaatatcacttcctcaaacaattcaac |
115 |
Q |
| |
|
|||||||| | |||||||||| ||||||||| ||| || | ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37834037 |
tgtgattctggaaatctagatggcctcaaaaagaatctctcttcatattatgtccaatgcaattgaattaataaaatatcacttcctcaaacaattcaac |
37834136 |
T |
|
| Q |
116 |
taaa |
119 |
Q |
| |
|
|||| |
|
|
| T |
37834137 |
taaa |
37834140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 111 - 196
Target Start/End: Original strand, 37834227 - 37834312
Alignment:
| Q |
111 |
tcaactaaaacaatgactacctcctcaaatttctccttagtacttatgttctgcttggttgccaaatcaaaaacagtatccaggtt |
196 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| | | |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37834227 |
tcaactaaaacaatgactacctcatcaaatttctccctggcacttatgttctgctcagttgccaaatcaaaaacagtatccaggtt |
37834312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 278 - 477
Target Start/End: Original strand, 1078876 - 1079075
Alignment:
| Q |
278 |
tttgatgttgtaggattctctagtatcaaatggatttgagcaacaaggacgtaaggacatcttgacagaagctcttgggcaacctgaacaccctggtcgt |
377 |
Q |
| |
|
||||||||||||||||||||| || ||||| ||||||| || | | |||||| ||||||||||| |||| |||||| || ||||||| ||||||| |
|
|
| T |
1078876 |
tttgatgttgtaggattctctcgtgtcaaacggatttgtgcgaaatggacgtgaggacatcttggtgaaagcccttggggaagatgaacacagtggtcgt |
1078975 |
T |
|
| Q |
378 |
gttcgtgctgttggtcaaggtgtggggattcgagaacacttcggatcacaatttcattccacccaaactgttatcaatgatgcccagctagcagccttga |
477 |
Q |
| |
|
||| |||||||||||| ||||||||| ||| ||||| | || |||||| ||| || ||||||| ||||||||| ||||||||| || |||||||||| |
|
|
| T |
1078976 |
gtttgtgctgttggtcgaggtgtgggaatttgagaataatttggatcaaaatgtctatccaccccgtctgttatcagtgatgcccaacttgcagccttga |
1079075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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