View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12487_low_10 (Length: 327)
Name: NF12487_low_10
Description: NF12487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12487_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 7 - 318
Target Start/End: Original strand, 3988247 - 3988557
Alignment:
| Q |
7 |
gagggccagcaacagtatcatcccaaagtttgtctaacattttggaactaaaataaatattgattgatgatatctaatattaatatgagggttctt---a |
103 |
Q |
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| T |
3988247 |
gagggccagcaacagtatcatcccaaagtttgtctaacattttggaactaaaataaatattgattgataatatctaatattaatatgagggttcttctta |
3988346 |
T |
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| Q |
104 |
tactaagcttgtgtatgcactctatcnnnnnnnnnnnnnngagagtgatgcttaaaatatctacggctaaaattggatcaagtgttttcctgcttccaag |
203 |
Q |
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| T |
3988347 |
tattaagcttgtgtatgcactctatctatatataga----gagagtgatgcttaaaatatctacggctaaaattggatcaagtgttttcctgcttccaag |
3988442 |
T |
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| Q |
204 |
tgtaactaacgagatatttgtgagtggcaatgtggtaaaaacaccaaggagtggaaatagtgagactaaaatggataagaatgaagactaggtgaatgtg |
303 |
Q |
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| T |
3988443 |
tgtaactaacgagatatttgtgagtggcaatgtggtaaaaacaccaaggagtggaaatagtgagactaaaatggataagaatgaagactaggtgaatgtg |
3988542 |
T |
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| Q |
304 |
ggacagacacaggtt |
318 |
Q |
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| T |
3988543 |
ggacagacagaggtt |
3988557 |
T |
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