View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12487_low_13 (Length: 253)
Name: NF12487_low_13
Description: NF12487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12487_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 46045038 - 46044822
Alignment:
| Q |
18 |
tgcatattcatggtggtgggttagccacatcaggacaaaacaatcaaaatggctggaacaaagtctccaaggtatgttttttgctacgtaaaatttcatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46045038 |
tgcatattcatggtggtgggttagccacatcaggacaaaacaatcaaaatggctggaacaaagtctccaaggtatgttttttgctacgtaaaatttcatc |
46044939 |
T |
|
| Q |
118 |
atatatggtttgaatatcatttttatgtctgctaacgttgtaatccattgtcaatggttttatttttattgcgggtttgaacctgcgtctctcatcatat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46044938 |
atatatggtttgaatatcatttttatgtctgctaacgttgtaatccattgtcaatggttttatttttattgcgggtttgaacctgcgtctctcatcatat |
46044839 |
T |
|
| Q |
218 |
caaatgttccggctatt |
234 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
46044838 |
caaatgttccggctatt |
46044822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 27973522 - 27973600
Alignment:
| Q |
18 |
tgcatattcatggtggtgggttagccacatcaggacaaaacaatcaaaatggctggaacaaagtctccaaggtatgttt |
96 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| |||||||||||| |||| ||| ||||||||||||||||| |
|
|
| T |
27973522 |
tgcatattcatggtggtgggccagccacattaggacaaagcaatcaaaatggttggatcaatgtctccaaggtatgttt |
27973600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 13751224 - 13751163
Alignment:
| Q |
18 |
tgcatattcatggtggtgggttagccacatcaggacaaaacaatcaaaatggctggaacaaa |
79 |
Q |
| |
|
|||||||||||||||||||| ||| ||| |||| ||||| |||||||||||| |||| |||| |
|
|
| T |
13751224 |
tgcatattcatggtggtgggctagtcacgtcagaacaaagcaatcaaaatggatggagcaaa |
13751163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 28754640 - 28754572
Alignment:
| Q |
22 |
tattcatggtggtgggttagccacatcaggacaaaacaatcaaaatggctggaacaaagtctccaaggt |
90 |
Q |
| |
|
|||||||||||||||| |||||||| || ||||| |||||||||||| ||||||||| ||||||||| |
|
|
| T |
28754640 |
tattcatggtggtgggccagccacattagaacaaagcaatcaaaatggatggaacaaaacctccaaggt |
28754572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University