View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12487_low_14 (Length: 252)
Name: NF12487_low_14
Description: NF12487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12487_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 2391487 - 2391616
Alignment:
| Q |
18 |
gaaagattagtttgtatggttatgacatcgatagccaatttattgattatctccacagcaaccctcgacctttcagaggagaagaataacctagatggtg |
117 |
Q |
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| T |
2391487 |
gaaagattagtttgtatggttatgacatcgatagccaatttattgattatctccacagcaaccctcgacctttcagaggagaagaataacctagatggtg |
2391586 |
T |
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| Q |
118 |
atgatatactccatagtgataattcacagg |
147 |
Q |
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| T |
2391587 |
atgatatactccatagtgataattcccagg |
2391616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 2380607 - 2380714
Alignment:
| Q |
18 |
gaaagattagtttgtatggttatgacatcgatagccaatttattgattatctccacagcaaccctcgacctttca--gaggagaagaataacctagatgg |
115 |
Q |
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| T |
2380607 |
gaaagattagtttgtatggtaactccatcgatagccaaattattaattatctccgcaaaaaccgtggacctttcacggaggagaagaataacttagatgg |
2380706 |
T |
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| Q |
116 |
tgatgata |
123 |
Q |
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| T |
2380707 |
taatgata |
2380714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 2382963 - 2383070
Alignment:
| Q |
18 |
gaaagattagtttgtatggttatgacatcgatagccaatttattgattatctccacagcaaccctcgaccttt--cagaggagaagaataacctagatgg |
115 |
Q |
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||||||||| |||||||||| || ||||||||||||| ||||| ||||||| | || |||| | ||||||| ||||||||||||||||| ||||||| |
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| T |
2382963 |
gaaagattaatttgtatggtaattccatcgatagccaaattattaattatcttcgcaaaaaccgtggacctttcacagaggagaagaataacttagatgg |
2383062 |
T |
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| Q |
116 |
tgatgata |
123 |
Q |
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| T |
2383063 |
taatgata |
2383070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 2381821 - 2381927
Alignment:
| Q |
18 |
gaaagattagtttgtatggttatgacatcgatagccaatttattgattatctccacagcaaccctcgaccttt--cagaggagaagaataacctagatgg |
115 |
Q |
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|||||||||||||| |||| | |||| ||| ||||||||||| ||||||||| || ||||| | ||||||| ||||| ||||||||||| ||||||| |
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| T |
2381821 |
gaaagattagtttgcgtggtatttacattgatcgccaatttattaattatctccgcaacaaccgtggacctttcacagagtagaagaataacttagatgg |
2381920 |
T |
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| Q |
116 |
tgatgat |
122 |
Q |
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| T |
2381921 |
taatgat |
2381927 |
T |
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