View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12487_low_17 (Length: 205)

Name: NF12487_low_17
Description: NF12487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12487_low_17
NF12487_low_17
[»] chr1 (17 HSPs)
chr1 (3-187)||(38226976-38227160)
chr1 (3-171)||(38227064-38227232)
chr1 (28-171)||(38227136-38227279)
chr1 (28-101)||(27781006-27781079)
chr1 (29-100)||(27777490-27777561)
chr1 (29-100)||(27782400-27782471)
chr1 (110-187)||(17663556-17663633)
chr1 (100-171)||(27781006-27781077)
chr1 (105-171)||(27777494-27777560)
chr1 (105-171)||(27782401-27782467)
chr1 (110-185)||(17700348-17700423)
chr1 (133-187)||(27777591-27777645)
chr1 (133-187)||(27782316-27782370)
chr1 (44-100)||(17663562-17663618)
chr1 (63-100)||(27781080-27781117)
chr1 (44-100)||(17700361-17700417)
chr1 (135-171)||(27781080-27781116)
[»] chr7 (2 HSPs)
chr7 (113-186)||(440914-440987)
chr7 (43-99)||(440929-440985)
[»] chr4 (6 HSPs)
chr4 (110-184)||(35250166-35250240)
chr4 (110-187)||(51220019-51220096)
chr4 (28-100)||(35250178-35250250)
chr4 (110-187)||(51220806-51220883)
chr4 (38-100)||(51220034-51220096)
chr4 (38-98)||(51220823-51220883)


Alignment Details
Target: chr1 (Bit Score: 129; Significance: 6e-67; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 3 - 187
Target Start/End: Complemental strand, 38227160 - 38226976
Alignment:
Q  3 atttgaacgaacttccaagtgatgataatgaaggcgaaattgaattagggtcaaaagttgtgaaaaatttagatttgaacgagcttccaagtgatgataa 102  Q
    |||||||||| ||||||||||||||||||||||| |||  ||||||||||||||||| |||||| ||||| ||||||||||| |||||||||||||||||    
T  38227160 atttgaacgagcttccaagtgatgataatgaaggtgaagctgaattagggtcaaaagatgtgaagaattttgatttgaacgaacttccaagtgatgataa 38227061  T
Q  103 tcaaggcgaaactgaatttgggtcaaaagttgtgaagaatttagatttaaacgagcttccaagtgatgagtttgaagatgaaacc 187  Q
    | |||| ||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  38227060 tgaaggtgaaactgaatcagggtcaaaagttgtgaagaatttagatttgaacgagcttccaagtgatgagtttgaagataaaacc 38226976  T

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Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 3 - 171
Target Start/End: Complemental strand, 38227232 - 38227064
Alignment:
Q  3 atttgaacgaacttccaagtgatgataatgaaggcgaaattgaattagggtcaaaagttgtgaaaaatttagatttgaacgagcttccaagtgatgataa 102  Q
    |||||||||| ||| ||||||| ||||||||||| |||| ||||||||||||||||||||| || ||| | |||||||||||||||||||||||||||||    
T  38227232 atttgaacgagctttcaagtgacgataatgaaggtgaaactgaattagggtcaaaagttgttaagaatgttgatttgaacgagcttccaagtgatgataa 38227133  T
Q  103 tcaaggcgaaactgaatttgggtcaaaagttgtgaagaatttagatttaaacgagcttccaagtgatga 171  Q
    | |||| ||| ||||||| |||||||||| |||||||||||| ||||| ||||| ||||||||||||||    
T  38227132 tgaaggtgaagctgaattagggtcaaaagatgtgaagaattttgatttgaacgaacttccaagtgatga 38227064  T

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Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 171
Target Start/End: Complemental strand, 38227279 - 38227136
Alignment:
Q  28 taatgaaggcgaaattgaattagggtcaaaagttgtgaaaaatttagatttgaacgagcttccaagtgatgataatcaaggcgaaactgaatttgggtca 127  Q
    ||||||||| |||| |||||||||||||||||||||||| ||| | ||||||||||||||| ||||||| |||||| |||| ||||||||||| ||||||    
T  38227279 taatgaaggtgaaactgaattagggtcaaaagttgtgaagaatgttgatttgaacgagctttcaagtgacgataatgaaggtgaaactgaattagggtca 38227180  T
Q  128 aaagttgtgaagaatttagatttaaacgagcttccaagtgatga 171  Q
    |||||||| |||||| | ||||| ||||||||||||||||||||    
T  38227179 aaagttgttaagaatgttgatttgaacgagcttccaagtgatga 38227136  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 27781006 - 27781079
Alignment:
Q  28 taatgaaggcgaaattgaattagggtcaaaagttgtgaaaaatttagatttgaacgagcttccaagtgatgata 101  Q
    ||||||||| ||||   |||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||    
T  27781006 taatgaaggtgaaacaaaattagggtcaaaagttgtgaagaattttgatttggacgagcttccaagtgatgata 27781079  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 27777490 - 27777561
Alignment:
Q  29 aatgaaggcgaaattgaattagggtcaaaagttgtgaaaaatttagatttgaacgagcttccaagtgatgat 100  Q
    |||||||| ||||  ||| ||||||||||||||||||| ||||| ||||||||||||||||||||| |||||    
T  27777490 aatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatgat 27777561  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 27782471 - 27782400
Alignment:
Q  29 aatgaaggcgaaattgaattagggtcaaaagttgtgaaaaatttagatttgaacgagcttccaagtgatgat 100  Q
    |||||||| ||||  ||| ||||||||||||||||||| ||||| ||||||||||||||||||||| |||||    
T  27782471 aatgaaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatgat 27782400  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 17663556 - 17663633
Alignment:
Q  110 gaaactgaatttgggtcaaaagttgtgaagaatttagatttaaacgagcttccaagtgatgagtttgaagatgaaacc 187  Q
    ||||| ||||| ||||||| |||||| | |||||| ||||| || ||||||||||||||||| |||||||||||||||    
T  17663556 gaaaccgaattagggtcaagagttgtcaggaattttgatttgaatgagcttccaagtgatgattttgaagatgaaacc 17663633  T

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Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 27781006 - 27781077
Alignment:
Q  100 taatcaaggcgaaactgaatttgggtcaaaagttgtgaagaatttagatttaaacgagcttccaagtgatga 171  Q
    |||| |||| |||||  |||| ||||||||||||||||||||||| |||||  |||||||||||||||||||    
T  27781006 taatgaaggtgaaacaaaattagggtcaaaagttgtgaagaattttgatttggacgagcttccaagtgatga 27781077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 27777494 - 27777560
Alignment:
Q  105 aaggcgaaactgaatttgggtcaaaagttgtgaagaatttagatttaaacgagcttccaagtgatga 171  Q
    |||| ||||| ||| | ||||||||||||||||||||||| ||||| ||||||||||||||| ||||    
T  27777494 aaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatga 27777560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 27782467 - 27782401
Alignment:
Q  105 aaggcgaaactgaatttgggtcaaaagttgtgaagaatttagatttaaacgagcttccaagtgatga 171  Q
    |||| ||||| ||| | ||||||||||||||||||||||| ||||| ||||||||||||||| ||||    
T  27782467 aaggtgaaacagaactagggtcaaaagttgtgaagaattttgatttgaacgagcttccaagtaatga 27782401  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 185
Target Start/End: Complemental strand, 17700423 - 17700348
Alignment:
Q  110 gaaactgaatttgggtcaaaagttgtgaagaatttagatttaaacgagcttccaagtgatgagtttgaagatgaaa 185  Q
    ||||| ||||| ||||||| |||||| | |||| | ||||| || ||||||||||||||||| |||||||||||||    
T  17700423 gaaaccgaattagggtcaagagttgtcaggaatgttgatttgaatgagcttccaagtgatgattttgaagatgaaa 17700348  T

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Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 27777591 - 27777645
Alignment:
Q  133 tgtgaagaatttagatttaaacgagcttccaagtgatgagtttgaagatgaaacc 187  Q
    |||||||||||||||||| |||||| || |||||||||| | |||||||||||||    
T  27777591 tgtgaagaatttagatttgaacgagtttacaagtgatgattgtgaagatgaaacc 27777645  T

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Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 27782370 - 27782316
Alignment:
Q  133 tgtgaagaatttagatttaaacgagcttccaagtgatgagtttgaagatgaaacc 187  Q
    |||||||||||||||||| |||||| || |||||||||| | |||||||||||||    
T  27782370 tgtgaagaatttagatttgaacgagttttcaagtgatgattgtgaagatgaaacc 27782316  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 17663562 - 17663618
Alignment:
Q  44 gaattagggtcaaaagttgtgaaaaatttagatttgaacgagcttccaagtgatgat 100  Q
    ||||||||||||| |||||| |  ||||| |||||||| ||||||||||||||||||    
T  17663562 gaattagggtcaagagttgtcaggaattttgatttgaatgagcttccaagtgatgat 17663618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 27781080 - 27781117
Alignment:
Q  63 tgaaaaatttagatttgaacgagcttccaagtgatgat 100  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  27781080 tgaagaattttgatttgaacgagcttccaagtgatgat 27781117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 17700417 - 17700361
Alignment:
Q  44 gaattagggtcaaaagttgtgaaaaatttagatttgaacgagcttccaagtgatgat 100  Q
    ||||||||||||| |||||| |  ||| | |||||||| ||||||||||||||||||    
T  17700417 gaattagggtcaagagttgtcaggaatgttgatttgaatgagcttccaagtgatgat 17700361  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 27781080 - 27781116
Alignment:
Q  135 tgaagaatttagatttaaacgagcttccaagtgatga 171  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  27781080 tgaagaattttgatttgaacgagcttccaagtgatga 27781116  T

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Target: chr7 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 440987 - 440914
Alignment:
Q  113 actgaatttgggtcaaaagttgtgaagaatttagatttaaacgagcttccaagtgatgagtttgaagatgaaac 186  Q
    |||||||| ||| ||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||    
T  440987 actgaattagggccaaaagttgtgaagaattttgatttgaacgagcttccaagtgatgactttgaagatgaaac 440914  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 440985 - 440929
Alignment:
Q  43 tgaattagggtcaaaagttgtgaaaaatttagatttgaacgagcttccaagtgatga 99  Q
    |||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||    
T  440985 tgaattagggccaaaagttgtgaagaattttgatttgaacgagcttccaagtgatga 440929  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 110 - 184
Target Start/End: Complemental strand, 35250240 - 35250166
Alignment:
Q  110 gaaactgaatttgggtcaaaagttgtgaagaatttagatttaaacgagcttccaagtgatgagtttgaagatgaa 184  Q
    ||||||||| | ||||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||||    
T  35250240 gaaactgaaatcgggtcaaaagttgtgaagaattttgatttgaacgagcttgcaagtgatgattttgaagatgaa 35250166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 110 - 187
Target Start/End: Complemental strand, 51220096 - 51220019
Alignment:
Q  110 gaaactgaatttgggtcaaaagttgtgaagaatttagatttaaacgagcttccaagtgatgagtttgaagatgaaacc 187  Q
    ||||||||||| ||||||| |||||| | |||||| ||||  || ||||||||||||||||| |||||||||||||||    
T  51220096 gaaactgaattagggtcaatagttgttatgaattttgattcgaatgagcttccaagtgatgattttgaagatgaaacc 51220019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 35250250 - 35250178
Alignment:
Q  28 taatgaaggcgaaattgaattagggtcaaaagttgtgaaaaatttagatttgaacgagcttccaagtgatgat 100  Q
    ||||||||  |||| |||| | ||||||||||||||||| ||||| ||||||||||||||| |||||||||||    
T  35250250 taatgaagctgaaactgaaatcgggtcaaaagttgtgaagaattttgatttgaacgagcttgcaagtgatgat 35250178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 187
Target Start/End: Complemental strand, 51220883 - 51220806
Alignment:
Q  110 gaaactgaatttgggtcaaaagttgtgaagaatttagatttaaacgagcttccaagtgatgagtttgaagatgaaacc 187  Q
    ||||||||||| ||||||| | |||| | |||||| || || |||||||||||||||||||  |||||||||||||||    
T  51220883 gaaactgaattagggtcaataattgttatgaattttgaattgaacgagcttccaagtgatggttttgaagatgaaacc 51220806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 51220096 - 51220034
Alignment:
Q  38 gaaattgaattagggtcaaaagttgtgaaaaatttagatttgaacgagcttccaagtgatgat 100  Q
    |||| |||||||||||||| |||||| |  ||||| |||| ||| ||||||||||||||||||    
T  51220096 gaaactgaattagggtcaatagttgttatgaattttgattcgaatgagcttccaagtgatgat 51220034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 51220883 - 51220823
Alignment:
Q  38 gaaattgaattagggtcaaaagttgtgaaaaatttagatttgaacgagcttccaagtgatg 98  Q
    |||| |||||||||||||| | |||| |  ||||| || ||||||||||||||||||||||    
T  51220883 gaaactgaattagggtcaataattgttatgaattttgaattgaacgagcttccaagtgatg 51220823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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