View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12487_low_2 (Length: 549)
Name: NF12487_low_2
Description: NF12487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12487_low_2 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 514; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 20 - 549
Target Start/End: Complemental strand, 54460561 - 54460032
Alignment:
| Q |
20 |
catagtccttcataggttcaaactcttcttgattcagccagtaatgtacttcatctgaatttcaaaaattattttccatctttagtattggttctccttt |
119 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54460561 |
catagtccttcataggttcaaattcttcttgattcagccagtaatgtacttcatctgaatttcaaaaattattttccatctttagtattggttctccttt |
54460462 |
T |
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| Q |
120 |
ccctacaagtgtcattacttggtctgtttctttgttaacatcatctgtatcattgatcaacaaatgagttttttgtgatatagaggatgttgatgtagga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
54460461 |
ccctacaagtgtcattacttggtctgtttctttgttaacatcatctgtatcagtgatcaacaaatgtgttttttgtgatatagaggatgttgatgtagga |
54460362 |
T |
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| Q |
220 |
cttgcattattttgatggagtttcttcatattctttaggtgttttttccctttcatatggtcttccatcacagcttgtgagaaagcgccaatttgacaat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54460361 |
cttgcattattttgatggagtttcttcatattctttaggtgttttttccctttcatatggtcttccatcacagcttgtgagaaagcgccaatttgacaat |
54460262 |
T |
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| Q |
320 |
gctcacaccataaacgtccaaccttcctcctctttgccaatgcactttccttccatgcttcatcggttgcagcgtcacttctacacccggaaaaacctat |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
54460261 |
gctcacaccataaacgtccaaccttcctcctctttgccaatgcactttccttccatgcttcatcggttgcagcgtcacttctacactcggaaaaacctat |
54460162 |
T |
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| Q |
420 |
cttttggcttttctccacaagctgctcctcaattttagattctgttatatccttatcagcattcatctccacaagcttcttctcattttcggatgttgtt |
519 |
Q |
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| T |
54460161 |
cttttggcttttctccacaagctgctcctcaattttagattctgttatatccttatcagcattcatctccacaagcttcttctcattttcggatgttgtt |
54460062 |
T |
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| Q |
520 |
atacttacaccattatcagcaaccatctca |
549 |
Q |
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| T |
54460061 |
atacttacaccattatcagcaaccatctca |
54460032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 431 - 548
Target Start/End: Complemental strand, 54460036 - 54459919
Alignment:
| Q |
431 |
tctccacaagctgctcctcaattttagattctgttatatccttatcagcattcatctccacaagcttcttctcattttcggatgttgttatacttacacc |
530 |
Q |
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|||| ||||||||||||||||||||||||||||||| || ||||||||| |||||||||||| | ||||||||||||| ||||||||||||||||||||| |
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| T |
54460036 |
tctcaacaagctgctcctcaattttagattctgttacattcttatcagccttcatctccacaggattcttctcatttttggatgttgttatacttacacc |
54459937 |
T |
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| Q |
531 |
attatcagcaaccatctc |
548 |
Q |
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| T |
54459936 |
attatcagccatcatctc |
54459919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 242 - 344
Target Start/End: Complemental strand, 54059164 - 54059062
Alignment:
| Q |
242 |
tcttcatattctttaggtgttttttccctttcatatggtcttccatcacagcttgtgagaaagcgccaatttgacaatgctcacaccataaacgtccaac |
341 |
Q |
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||||||| ||||| | ||||||||||||||| |||| |||||||||||| ||| |||| || |||||||||||| | ||||||||||||| |||||| |
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| T |
54059164 |
tcttcattttcttaatgtgttttttcccttttttatgctcttccatcacaacttttgaggtagtgccaatttgacagagttcacaccataaacctccaac |
54059065 |
T |
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| Q |
342 |
ctt |
344 |
Q |
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||| |
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| T |
54059064 |
ctt |
54059062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 50
Target Start/End: Complemental strand, 54460600 - 54460570
Alignment:
| Q |
20 |
catagtccttcataggttcaaactcttcttg |
50 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
54460600 |
catagtccttcataggttcaaactcttcttg |
54460570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 250 - 466
Target Start/End: Original strand, 15037732 - 15037945
Alignment:
| Q |
250 |
ttctttaggtgttttttccctttcatatggtcttccatcacagcttgtgagaaagcgccaatttgacaatgctcacaccataaacgtccaaccttcctcc |
349 |
Q |
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||||||| ||||||||||||||| ||||| |||||||||| |||||||| | |||||||||||| ||||||||||||||| || | |||| || |
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| T |
15037732 |
ttctttatgtgttttttcccttttatatgcctttccatcacaacttgtgagttggtgccaatttgacagagctcacaccataaacctctagccttaatca |
15037831 |
T |
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| Q |
350 |
tctttgccaatgcactttccttccatgcttcatcggttgcagcgtcacttctacacccggaaaaacctatcttttggcttttctccacaagctgctcctc |
449 |
Q |
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| T |
15037832 |
tttctgtcaatgcact---cttccctgcttcctcagttgcagcaccttttttactctcaaaaaaatctacattttggtttttctccgcatgttgctcctc |
15037928 |
T |
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| Q |
450 |
aattttagattctgtta |
466 |
Q |
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| T |
15037929 |
atttttagattctgtta |
15037945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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