View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12487_low_3 (Length: 486)
Name: NF12487_low_3
Description: NF12487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12487_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 145 - 467
Target Start/End: Original strand, 9821130 - 9821452
Alignment:
| Q |
145 |
atcatatggagcactgcttgacgtaaatacaaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9821130 |
atcatatggagcactgcttgacgtaaatacgaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag |
9821229 |
T |
|
| Q |
245 |
aagtcaactagtaaagtaaaatactaaaaaatgatgtcaacaatcaaaagcagaacattcaattaatactacatcctttctcacataaagttttgaagca |
344 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9821230 |
aagtcaactagtaaagtaaactactaaaaaatgatgtcaacaatcaaaagcagaacattcaattaatactacatcctttctcacataaagttttgaagca |
9821329 |
T |
|
| Q |
345 |
atttcgttcatcgcacgccactcttcattaaaacctttctatatagtacacactaatggaattaatcctaagatttgttacctaacattatctgcataat |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9821330 |
atttcgttcatcgcacgccactcttcattaaaacctttctatatagtacacactaatggaattaatcctaagatttgttacctaacattatctgcataat |
9821429 |
T |
|
| Q |
445 |
ctttggtccgggaaggtggagca |
467 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9821430 |
ctttggtccgggaaggtggagca |
9821452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 6 - 141
Target Start/End: Original strand, 9820378 - 9820513
Alignment:
| Q |
6 |
tggagaagcagagataaaatgcaacaatgatcttagaatcagacatatttctaccacaaagatcaacttaactcacagtaaagtaatgacagtatgggtt |
105 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9820378 |
tggaaaagcaaagataaaatgcaacaatgatcttagaatcagacatatttctaccaaaaagatcaacttaactcacagtaaagtaatgacagtatgggtt |
9820477 |
T |
|
| Q |
106 |
caaaatgtatgtttcactaacaaatataaacttacc |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
9820478 |
caaaatgtatgtttcactaacaaatataaacttacc |
9820513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 38874021 - 38874145
Alignment:
| Q |
17 |
agataaaatgcaacaatgatcttagaatcagacatatttctaccacaaagatcaacttaactcacagtaaagtaatgacagtatgggttcaaaatgtatg |
116 |
Q |
| |
|
|||||||||||||||||||||| ||||||| || ||||||||||||||||||||||| |||||||| | ||||||||||||||| |||||| ||||||| |
|
|
| T |
38874021 |
agataaaatgcaacaatgatctcagaatcatacgtatttctaccacaaagatcaactcaactcacaatgaagtaatgacagtataagttcaagatgtatg |
38874120 |
T |
|
| Q |
117 |
tttcactaacaaatataaacttacc |
141 |
Q |
| |
|
||||||||| ||||||||||||||| |
|
|
| T |
38874121 |
tttcactaagaaatataaacttacc |
38874145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 145 - 247
Target Start/End: Original strand, 38875382 - 38875481
Alignment:
| Q |
145 |
atcatatggagcactgcttgacgtaaatacaaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag |
244 |
Q |
| |
|
||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
38875382 |
atcatatggagcactacttgaagtaaatatgaaagaacctccaccattccagcttaatgcagctagcctgatttgtcgaaaattca---caactcataag |
38875478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 367 - 467
Target Start/End: Original strand, 38875750 - 38875850
Alignment:
| Q |
367 |
cttcattaaaacctttctatatagtacacactaatggaattaatcctaagatttgttacctaacattatctgcataatctttggtccgggaaggtggagc |
466 |
Q |
| |
|
|||||||||||| |||||| |||||| | | |||| ||||||||||||||||| ||||||||||||||| ||||| |||||||| |||||||||||||| |
|
|
| T |
38875750 |
cttcattaaaacatttctaaatagtaaaaattaattaaattaatcctaagatttattacctaacattatcagcatagtctttggttcgggaaggtggagc |
38875849 |
T |
|
| Q |
467 |
a |
467 |
Q |
| |
|
| |
|
|
| T |
38875850 |
a |
38875850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 266 - 366
Target Start/End: Original strand, 38875620 - 38875720
Alignment:
| Q |
266 |
tactaaaaaatgatgtcaacaatcaaaagcagaacattcaattaatactacatcctttctcacataaagttttgaagcaatttcgttcatcgcacgccac |
365 |
Q |
| |
|
||||||||| |||||||||||||||||| || ||||||||||||| ||||||||||| |||| |||||||| | ||| |||||||||||||| |||| |
|
|
| T |
38875620 |
tactaaaaatcgatgtcaacaatcaaaagtggagcattcaattaatattacatcctttcacacaacaagttttgtatcaaattcgttcatcgcacaccac |
38875719 |
T |
|
| Q |
366 |
t |
366 |
Q |
| |
|
| |
|
|
| T |
38875720 |
t |
38875720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 145 - 263
Target Start/End: Complemental strand, 38693718 - 38693599
Alignment:
| Q |
145 |
atcatatggagcactgcttgacgtaaatacaaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag |
244 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||| ||| || |||| ||||||||||||||||| |
|
|
| T |
38693718 |
atcatatgaagcactgcttgacgtaaatgcaaaagaaccttcaccattccagcttaaagcagctaacctggttttttgaaaaatcacatcaactcataag |
38693619 |
T |
|
| Q |
245 |
aa-gtcaactagtaaagtaa |
263 |
Q |
| |
|
|| | |||||||||||||| |
|
|
| T |
38693618 |
aaggaaaactagtaaagtaa |
38693599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 38694179 - 38694151
Alignment:
| Q |
18 |
gataaaatgcaacaatgatcttagaatca |
46 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
38694179 |
gataaaatgcaacaatgatcttagaatca |
38694151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University