View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12487_low_4 (Length: 483)
Name: NF12487_low_4
Description: NF12487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12487_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 51912178 - 51911714
Alignment:
| Q |
1 |
gattaaaacatgactttgtacaacagcaacatggatttacctttggacaagttgggcaagagcaagtgcaggtgcatttgcaactgcataaagaagggca |
100 |
Q |
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| T |
51912178 |
gattaaaacatgactttgtacaacagcaacatggatttacctttggacaagttgggcaagagcaagtgcaggtgcatttgcaactgcataaagaagggca |
51912079 |
T |
|
| Q |
101 |
tgatggacacccaaaattgcaactagttggaaaagtacaacaatttcccgaaccaaggctttgtttacagcaatttgatttgggacaagagaaacaacag |
200 |
Q |
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| T |
51912078 |
tgatggacacccaaaattgcaactagttggaaaagtacaacaatttcccgaaccaaggctttgtttacagcaatttgatttgggacaagagaaacaacag |
51911979 |
T |
|
| Q |
201 |
caacagttccacttaggtaaggaacaagtgaaggatggaaaacagttgctgcaactgcaacaactgcatggtttacagtcactgcagcagcttggtaatt |
300 |
Q |
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| T |
51911978 |
caacagttccacttaggtaaggaacaagtgaaggatggaaaacagttgctgcaactgcaacaactgcatggtttacagtcactgcagcagcttggtaatt |
51911879 |
T |
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| Q |
301 |
ttagatgtacagataatccatcacagcagcagcagcaacagcagatccaagacagattaaaacatggcaaacgactgcacataaaagttagttactcatg |
400 |
Q |
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| T |
51911878 |
ttagatgtacagataatccatcacagcagcagcagcagcagcagatccaagacagattaaaacatggcaaacgactgcacataaaagttagttactcatg |
51911779 |
T |
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| Q |
401 |
ttattcgttatagctattaaataacacttactagttactaactagtatcatacaagttcctgcct |
465 |
Q |
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| T |
51911778 |
ttattcgttatagctattaaataacacttactagttactaactagtatcatacaagttcctgcct |
51911714 |
T |
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