View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12488_high_3 (Length: 274)

Name: NF12488_high_3
Description: NF12488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12488_high_3
NF12488_high_3
[»] chr2 (5 HSPs)
chr2 (15-266)||(44742103-44742354)
chr2 (98-186)||(17303530-17303618)
chr2 (102-186)||(33050829-33050913)
chr2 (12-60)||(35658153-35658201)
chr2 (130-186)||(35658270-35658326)
[»] scaffold0042 (1 HSPs)
scaffold0042 (14-257)||(31050-31293)
[»] chr3 (10 HSPs)
chr3 (13-252)||(26373320-26373558)
chr3 (94-258)||(9192246-9192412)
chr3 (94-186)||(30499007-30499099)
chr3 (98-178)||(557578-557658)
chr3 (100-184)||(42433421-42433504)
chr3 (97-194)||(44558464-44558561)
chr3 (94-183)||(8819372-8819461)
chr3 (122-186)||(47720905-47720969)
chr3 (89-175)||(43335275-43335361)
chr3 (96-173)||(35739993-35740068)
[»] chr5 (9 HSPs)
chr5 (13-258)||(4157494-4157739)
chr5 (94-178)||(5215101-5215185)
chr5 (94-186)||(35193240-35193332)
chr5 (122-235)||(8552982-8553095)
chr5 (94-249)||(18012860-18013014)
chr5 (94-186)||(35078047-35078139)
chr5 (14-63)||(17589795-17589844)
chr5 (95-186)||(3925535-3925628)
chr5 (219-266)||(35077966-35078014)
[»] chr4 (5 HSPs)
chr4 (94-260)||(23096429-23096597)
chr4 (12-64)||(12328294-12328346)
chr4 (128-186)||(20626620-20626678)
chr4 (94-183)||(12328412-12328501)
chr4 (98-186)||(22065793-22065881)
[»] chr1 (2 HSPs)
chr1 (94-185)||(8881431-8881522)
chr1 (96-134)||(48563419-48563457)
[»] scaffold0445 (1 HSPs)
scaffold0445 (94-185)||(10391-10482)
[»] chr7 (1 HSPs)
chr7 (124-173)||(43574029-43574078)
[»] chr6 (1 HSPs)
chr6 (97-186)||(31750232-31750321)
[»] scaffold0031 (1 HSPs)
scaffold0031 (19-64)||(96085-96130)


Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 266
Target Start/End: Original strand, 44742103 - 44742354
Alignment:
Q  15 gtgcttgattctcttatattctaggtctgttgagatctgcatgtctcaaggcgttaagattgctttctcttcggtattcttatgctcgaaagagctatta 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44742103 gtgcttgattctcttatattctaggtctgttgagatctgcatgtctcaaggcgttaagattgctttctcttcggtattcttatgctcgaaagagctatta 44742202  T
Q  115 tgcatgttgttttgttcaggagcttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcccactttaaccctttttgatctgaacgga 214  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||    
T  44742203 tgcatgttgttttgttcaggaggttgctggtacgtggatcttgatactgtgttggcgattgatctatttgccaactttaaccctttttgatctgaacgga 44742302  T
Q  215 tgctcactcttcatcttttttgttacctggtttcgcgctcgtacacaggttc 266  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44742303 tgctcactcttcatcttttttgttacctggtttcgtgctcgtacacaggttc 44742354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 186
Target Start/End: Original strand, 17303530 - 17303618
Alignment:
Q  98 gctcgaaagagctattatgcatgttgttttgttcaggagcttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcc 186  Q
    |||||||||||||||||| | || || |||||||||| | ||| |||||||||||||| ||||  ||||||||||| ||||||||||||    
T  17303530 gctcgaaagagctattatacctgctgctttgttcagggggttgttggtacgtggatctcgatatcgtgttggcggtggatctattcgcc 17303618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 33050913 - 33050829
Alignment:
Q  102 gaaagagctattatgcatgttgttttgttcaggagcttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcc 186  Q
    ||||| |||||||| | || || |||||||||| | |  ||||||||||||| | ||||| ||||||||||| |||| |||||||    
T  33050913 gaaagggctattatacctgctgctttgttcaggggatcactggtacgtggatttggataccgtgttggcggtcgatccattcgcc 33050829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 35658153 - 35658201
Alignment:
Q  12 cctgtgcttgattctcttatattctaggtctgttgagatctgcatgtct 60  Q
    ||||||||||||||||| || ||| ||||||||| ||||||||| ||||    
T  35658153 cctgtgcttgattctctgatgttccaggtctgtttagatctgcaggtct 35658201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 35658270 - 35658326
Alignment:
Q  130 tcaggagcttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcc 186  Q
    ||||||| ||||||||||||||||| |  ||| ||||||||||| |||| |||||||    
T  35658270 tcaggaggttgctggtacgtggatcgttttaccgtgttggcggtcgatccattcgcc 35658326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 14 - 257
Target Start/End: Original strand, 31050 - 31293
Alignment:
Q  14 tgtgcttgattctcttatattctaggtctgttgagatctgcatgtctcaaggcgttaagattgctttctcttcggtattcttatgctcgaaagagctatt 113  Q
    ||||||||||||| | |||||  |||||||||||||| |||| |||||||||||| |||| ||||| ||||  ||||   ||||||||||||||||||||    
T  31050 tgtgcttgattctatgatatttcaggtctgttgagatatgcaggtctcaaggcgtcaagactgcttcctctctggtaccgttatgctcgaaagagctatt 31149  T
Q  114 atgcatgttgttttgttcaggagcttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcccact-ttaaccctttttgatctgaacg 212  Q
     ||| || ||||||||||||||| |||||||||||||||||||||||| |||||| |||| |||| ||||||| ||| ||||||| ||||||| ||||      
T  31150 ttgcctggtgttttgttcaggaggttgctggtacgtggatcttgataccgtgttgacggtcgatccattcgccaactcttaaccc-ttttgatttgaata 31248  T
Q  213 gatgctcactcttcatcttttttgttacctggtttcgcgctcgta 257  Q
    |||||||||||||||| |||||||| | |||||||||||| ||||    
T  31249 gatgctcactcttcatattttttgtaatctggtttcgcgcccgta 31293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 7e-55; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 26373558 - 26373320
Alignment:
Q  13 ctgtgcttgattctcttatattctaggtctgttgagatctgcatgtctcaaggcgttaagattgctttctcttcggtattcttatgctcgaaagagctat 112  Q
    |||||||||||||| | |||||  || |||||||||||||||| |||||||||||| |||| ||||| |||| |||||   |||||||||||||||||||    
T  26373558 ctgtgcttgattctatgatatttcagttctgttgagatctgcaggtctcaaggcgtcaagactgcttcctctccggtaccgttatgctcgaaagagctat 26373459  T
Q  113 tatgcatgttgttttgttcaggagcttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcccact-ttaaccctttttgatctgaac 211  Q
    | ||| |||||||||||||| ||| |||||||||||||||||||||||| |||||| |||| |||| ||||||| ||| ||||||||||| ||| |||||    
T  26373458 tttgcttgttgttttgttcaagaggttgctggtacgtggatcttgataccgtgttgacggtcgatccattcgccaactcttaaccctttt-gatttgaac 26373360  T
Q  212 ggatgctcactcttcatcttttttgttacctggtttcgcgc 252  Q
     |||||||||||||||| |||||||| |  |||||||||||    
T  26373359 agatgctcactcttcat-ttttttgtaatatggtttcgcgc 26373320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 258
Target Start/End: Complemental strand, 9192412 - 9192246
Alignment:
Q  94 ttatgctcgaaagagctattatgcatgttgttttgttcaggagcttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcccactt-t 192  Q
    |||||||||||||||||||||| | |||||||||||||| | |  ||||||||||||||| ||||||| |||||||| || |||| | || || | ||      
T  9192412 ttatgctcgaaagagctattattcttgttgttttgttcatggggctgctggtacgtggattttgataccgtgttggcagtcgatccactcaccaatttaa 9192313  T
Q  193 aaccctttttgatctgaacgga-tgctcactcttcatcttttttgttacctggtttcgcgctcgtac 258  Q
    ||| |||||||||||| |   | ||||| ||||||||||||||||| |||||||||||||| |||||    
T  9192312 aactctttttgatctgtatacattgctcgctcttcatcttttttgtaacctggtttcgcgcccgtac 9192246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 186
Target Start/End: Complemental strand, 30499099 - 30499007
Alignment:
Q  94 ttatgctcgaaagagctattatgcatgttgttttgttcaggagcttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcc 186  Q
    |||||||||||||||||| ||||||||||| |||||| ||| | |||||||||| |||||||||| || ||||||||||| |||| |||||||    
T  30499099 ttatgctcgaaagagctactatgcatgttgctttgttgagggggttgctggtacttggatcttgaaaccgtgttggcggtcgatccattcgcc 30499007  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 557578 - 557658
Alignment:
Q  98 gctcgaaagagctattatgcatgttgttttgttcaggagcttgctggtacgtggatcttgatactgtgttggcggttgatc 178  Q
    |||||||||||||||||| | || ||||||||||||| | ||| |||||||||||||||||||| ||||||||||| ||||    
T  557578 gctcgaaagagctattatacctgatgttttgttcagggggttgttggtacgtggatcttgataccgtgttggcggtcgatc 557658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 42433504 - 42433421
Alignment:
Q  100 tcgaaagagctattatgcatgttgttttgttcaggagcttgctggtacgtggatcttgatactgtgttggcggttgatctattcg 184  Q
    |||||||||||||||| | || || |||||||||| | |||||||||||||||||| ||||| ||||||||||| |||| |||||    
T  42433504 tcgaaagagctattatacctgctgctttgttcagggg-ttgctggtacgtggatctcgataccgtgttggcggtggatccattcg 42433421  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 194
Target Start/End: Complemental strand, 44558561 - 44558464
Alignment:
Q  97 tgctcgaaagagctattatgcatgttgttttgttca-ggagcttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcccactttaa 194  Q
    |||||||||||||| |||||| || || | |||||| |||||| ||||| || ||||| |||||||||||||| ||||||||| ||||||| |||||||    
T  44558561 tgctcgaaagagcttttatgcttgctgctgtgttcacggagct-gctggcacttggattttgatactgtgttgccggttgatccattcgcctactttaa 44558464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 8819461 - 8819372
Alignment:
Q  94 ttatgctcgaaagagctattatgcatgttgttttgttcaggagcttgctggtacgtggatcttgatactgtgttggcggttgatctattc 183  Q
    |||||||| ||||||||| ||||| || || |||||||||  | ||||||||||||||||||||| || || |||||||| |||| ||||    
T  8819461 ttatgctcaaaagagctactatgcctgctgatttgttcagtgggttgctggtacgtggatcttgaaaccgtattggcggtggatccattc 8819372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 47720905 - 47720969
Alignment:
Q  122 tgttttgttcaggagcttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcc 186  Q
    ||||||||||||| | ||| ||||||||||||||||||||  |||||||||| |||| |||||||    
T  47720905 tgttttgttcagggggttgttggtacgtggatcttgataccttgttggcggtcgatccattcgcc 47720969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 175
Target Start/End: Complemental strand, 43335361 - 43335275
Alignment:
Q  89 tattcttatgctcgaaagagctattatgcatgttgttttgttcaggagcttgctggtacgtggatcttgatactgtgttggcggttg 175  Q
    |||| ||||||||||||||||| |||| | ||||| |||| |||||   ||| |||||||||||| ||||| ||| |||||||||||    
T  43335361 tattgttatgctcgaaagagcttttatacttgttgctttggtcagggagttgttggtacgtggattttgattctgagttggcggttg 43335275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 173
Target Start/End: Complemental strand, 35740068 - 35739993
Alignment:
Q  96 atgctcgaaagagctattatgcatgttgttttgttca-ggagcttgctggtacgtggatcttgatactgtgttggcggt 173  Q
    ||||||||||||||| |||||| ||||| |||||||| ||||||   ||| || ||||| |||||| ||||||||||||    
T  35740068 atgctcgaaagagcttttatgcttgttgctttgttcagggagct---tggcacttggattttgataatgtgttggcggt 35739993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 4157494 - 4157739
Alignment:
Q  13 ctgtgcttgattctcttatattctaggtctgttgagatctgcatgtctcaaggcgttaagattgctttctcttcggtattcttatgctcgaaagagctat 112  Q
    |||||||||||||| | |||||| |||||||||| |||||||| |||||||||||| |||| | ||| |||| ||||||  ||||||| |||||||||||    
T  4157494 ctgtgcttgattctttgatattccaggtctgttgtgatctgcaggtctcaaggcgtcaagactacttcctctccggtatcgttatgctggaaagagctat 4157593  T
Q  113 tatgcatgttgttttgttcaggagcttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcccact-ttaaccctttttgatctgaac 211  Q
    | ||| |  | |||||||||||||  ||||||| ||||||||||||||| |||||| ||||  ||| ||||||| ||| ||||||| |||||||||||||    
T  4157594 tttgcctactattttgttcaggaggctgctggtgcgtggatcttgataccgtgttgacggtcaatccattcgccaactcttaaccc-ttttgatctgaac 4157692  T
Q  212 ggatgctcactcttcatcttttttgttacctggtttcgcgctcgtac 258  Q
     |||| |||||||||||||||||||| | ||| |||||||| |||||    
T  4157693 agatgttcactcttcatcttttttgtaatctgttttcgcgcccgtac 4157739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 5215101 - 5215185
Alignment:
Q  94 ttatgctcgaaagagctattatgcatgttgttttgttcaggagcttgctggtacgtggatcttgatactgtgttggcggttgatc 178  Q
    |||||||||||||||||| ||||||||||| |||||||| | | ||| ||||||||||||||||| ||||||||| |||| ||||    
T  5215101 ttatgctcgaaagagctactatgcatgttgctttgttcaaggggttgttggtacgtggatcttgaaactgtgttgacggtcgatc 5215185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 35193240 - 35193332
Alignment:
Q  94 ttatgctcgaaagagctattatgcatgttgttttgttcaggagcttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcc 186  Q
    |||||||||||||||||||||||| | ||| |||||||||||| ||| ||||||| ||||||| ||   ||||||  |||||||| |||||||    
T  35193240 ttatgctcgaaagagctattatgcctattggtttgttcaggaggttgttggtacgcggatctttatttcgtgttgctggttgatcaattcgcc 35193332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 235
Target Start/End: Complemental strand, 8553095 - 8552982
Alignment:
Q  122 tgttttgttcaggagcttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcccactttaaccctttttgatctgaacggatgctcac 221  Q
    ||||||||| ||||| ||| || || |||||||||||||  |||||| | |||||| |||||| | ||||||||| ||||| || || |||| ||||| |    
T  8553095 tgttttgtttaggaggttgttgataagtggatcttgatatcgtgttgacagttgatatattcgtcaactttaaccattttttatttgcacggttgctccc 8552996  T
Q  222 tcttcatctttttt 235  Q
    ||| ||||||||||    
T  8552995 tctccatctttttt 8552982  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 249
Target Start/End: Original strand, 18012860 - 18013014
Alignment:
Q  94 ttatgctcgaaagagctattatgcatgttgttttgttcaggagcttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcccactt-t 192  Q
    |||| ||| |||||||| || |||||| || |||||||| | | ||| |||||||||||||||||||| || ||||||||  ||| ||||||| ||||      
T  18012860 ttatactcaaaagagct-ttgtgcatgctgctttgttcaaggggttgttggtacgtggatcttgataccgtattggcggtcaatcaattcgccaacttaa 18012958  T
Q  193 aaccctttttgatctgaacggatgctcactcttcatcttttttgttacctggtttcg 249  Q
    |||||| ||| |||   || || | ||||||||||||||||| || |||||||||||    
T  18012959 aaccctcttttatc-ctacagacgatcactcttcatctttttcgtaacctggtttcg 18013014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 186
Target Start/End: Complemental strand, 35078139 - 35078047
Alignment:
Q  94 ttatgctcgaaagagctattatgcatgttgttttgttcaggagcttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcc 186  Q
    |||| ||||||||||||| | ||| || || ||| |||| | | || |||||||||||||||||| || ||||||||||| |||| |||||||    
T  35078139 ttatactcgaaagagctactgtgcctgctgctttcttcatggggtttctggtacgtggatcttgaaaccgtgttggcggtcgatccattcgcc 35078047  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 17589844 - 17589795
Alignment:
Q  14 tgtgcttgattctcttatattctaggtctgttgagatctgcatgtctcaa 63  Q
    |||| |||||||||| || ||| ||||||||||||||||||| |||||||    
T  17589844 tgtggttgattctctgatgttccaggtctgttgagatctgcaggtctcaa 17589795  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 186
Target Start/End: Original strand, 3925535 - 3925628
Alignment:
Q  95 tatgctcgaaagagctattatg---catgttgttttgttcaggagcttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcc 186  Q
    |||||||||||||||||||||    | || || |||||||||| | |||||||||||||||| ||| ||| ||||||| ||| |||| |||||||    
T  3925535 tatgctcgaaagagctattattatacctgctgctttgttcagggggttgctggtacgtggat-ttgttaccgtgttggtggtcgatccattcgcc 3925628  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 35078014 - 35077966
Alignment:
Q  219 cactcttcatctttttt-gttacctggtttcgcgctcgtacacaggttc 266  Q
    ||||||||||||||||| || || ||||||||||||||||||| |||||    
T  35078014 cactcttcatctttttttgtaacttggtttcgcgctcgtacacgggttc 35077966  T

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Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 94 - 260
Target Start/End: Complemental strand, 23096597 - 23096429
Alignment:
Q  94 ttatgctcgaaagagctattatgcatgttgttttgttcaggagcttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcccactt-t 192  Q
    |||||||||||||||||||||||||||||||||| |||||  |  ||||||||||||||| ||||||| ||||||||||| |||| |||| || | ||      
T  23096597 ttatgctcgaaagagctattatgcatgttgttttattcagcgggatgctggtacgtggattttgataccgtgttggcggtcgatccattcaccaatttaa 23096498  T
Q  193 aaccctttttgatctgaacgga-tgctcactcttcatcttttttgttacctggtttcgcgctcgtacac 260  Q
    ||| |||||||||||| |   | ||||| ||||||||||||||||| |||||||||||||| |||||||    
T  23096497 aactctttttgatctgtatacattgctcgctcttcatcttttttgtaacctggtttcgcgcccgtacac 23096429  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 12328294 - 12328346
Alignment:
Q  12 cctgtgcttgattctcttatattctaggtctgttgagatctgcatgtctcaag 64  Q
    ||||||||||||||||| ||||||||||||||||||||||| || ||||||||    
T  12328294 cctgtgcttgattctctaatattctaggtctgttgagatctacaagtctcaag 12328346  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 186
Target Start/End: Complemental strand, 20626678 - 20626620
Alignment:
Q  128 gttcaggagcttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcc 186  Q
    ||||||| | ||||| |||||||||||||||||| |||||||||||||||| |||||||    
T  20626678 gttcagggggttgctagtacgtggatcttgataccgtgttggcggttgatccattcgcc 20626620  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 12328412 - 12328501
Alignment:
Q  94 ttatgctcgaaagagctattatgcatgttgttttgttcaggagcttgctggtacgtggatcttgatactgtgttggcggttgatctattc 183  Q
    ||||||||||||||||||||||||  | ||| ||||||||| | ||||||||| ||||||| |||||| || ||| |||| |||| ||||    
T  12328412 ttatgctcgaaagagctattatgccggctgtgttgttcagggggttgctggtatgtggatcgtgataccgtattgacggtcgatccattc 12328501  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 186
Target Start/End: Original strand, 22065793 - 22065881
Alignment:
Q  98 gctcgaaagagctattatgcatgttgttttgttcaggagcttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcc 186  Q
    |||||||| | ||||||| | || || |||||| ||| | ||| |||||||||||||||||||| ||||||||||| |||| |||||||    
T  22065793 gctcgaaaaaactattatacctgctgctttgttaagggggttgttggtacgtggatcttgataccgtgttggcggtcgatccattcgcc 22065881  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 8881522 - 8881431
Alignment:
Q  94 ttatgctcgaaagagctattatgcatgttgttttgttcaggagcttgctggtacgtggatcttgatactgtgttggcggttgatctattcgc 185  Q
    |||||||||||| ||||||||||| ||||||||| || ||||| ||||||||||||||||||||| ||| ||||||| ||||||| ||||||    
T  8881522 ttatgctcgaaatagctattatgcctgttgtttttttaaggaggttgctggtacgtggatcttgaaactatgttggccgttgatccattcgc 8881431  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 134
Target Start/End: Original strand, 48563419 - 48563457
Alignment:
Q  96 atgctcgaaagagctattatgcatgttgttttgttcagg 134  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  48563419 atgctcgaaagagctattatgcttgttgttttgttcagg 48563457  T

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Target: scaffold0445 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 10391 - 10482
Alignment:
Q  94 ttatgctcgaaagagctattatgcatgttgttttgttcaggagcttgctggtacgtggatcttgatactgtgttggcggttgatctattcgc 185  Q
    |||||||| ||||||||  ||||| || || |||||||||| | ||||||||||||||||||||| |||||||||||||| |||| ||||||    
T  10391 ttatgctcaaaagagcttctatgcctgctgctttgttcagggggttgctggtacgtggatcttgaaactgtgttggcggtggatccattcgc 10482  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 173
Target Start/End: Complemental strand, 43574078 - 43574029
Alignment:
Q  124 ttttgttcaggagcttgctggtacgtggatcttgatactgtgttggcggt 173  Q
    |||| |||||| | |||||||||||||||||||||||| |||||||||||    
T  43574078 ttttattcagggggttgctggtacgtggatcttgataccgtgttggcggt 43574029  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 186
Target Start/End: Original strand, 31750232 - 31750321
Alignment:
Q  97 tgctcgaaagagctattatgcatgttgttttgttca-ggagcttgctggtacgtggatcttgatactgtgttggcggttgatctattcgcc 186  Q
    ||||||||||||||||||| | || || ||| |||| || | |||||||||||||||| ||| ||| ||||||||||| |||| |||||||    
T  31750232 tgctcgaaagagctattatacctgctgctttattcaggggggttgctggtacgtggat-ttgttaccgtgttggcggtcgatccattcgcc 31750321  T

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Target: scaffold0031 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 96130 - 96085
Alignment:
Q  19 ttgattctcttatattctaggtctgttgagatctgcatgtctcaag 64  Q
    |||||||||| || ||| || |||||||||||||||||||||||||    
T  96130 ttgattctctgatgttccagatctgttgagatctgcatgtctcaag 96085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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