View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12488_low_1 (Length: 579)
Name: NF12488_low_1
Description: NF12488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12488_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 18 - 571
Target Start/End: Original strand, 33297045 - 33297591
Alignment:
| Q |
18 |
ctttcctgctcaataaggcattgttgattgaaccagtgaccattcaaatcttctgttcaggttagctggactcttcaaaataaattctctatgtaggatc |
117 |
Q |
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| T |
33297045 |
ctttcctgctcaataaggcattgttgattgaaccagtgaccattcaaatcttctgttcaggttagctggactcttcaaaataaattctctatgtaggatc |
33297144 |
T |
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| Q |
118 |
tatttttggcaaattataagtgttccaacgtacttagctatttgataatagttcaaaacatcgtcttttggaagtagaagctcacagttgattcgaatat |
217 |
Q |
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| T |
33297145 |
tatttttggcaaattataagtgttccaacgtacttaaatatttgaaaatcgttcaaaacatagtctttcggaagtagaagctcatggatgagtcgaatat |
33297244 |
T |
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| Q |
218 |
ttgaccaatctcggttagacaaaaacaagtaaaaatgaatatagatgtctcaaaattcacctc-tatcctaacattgtttttatccaattgacaccgatt |
316 |
Q |
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|||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||| ||| |
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| T |
33297245 |
ttgaccggtgtcagttagacaaaaacaagtaaaaatgaatatagatgtctcaaaattcacctcatat-ctaacattgtttttatccaactgacaccaatt |
33297343 |
T |
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| Q |
317 |
aagtcactgtctcaactatataaacgaggaggaccatgagtttctacttctaagaaacgtcatcagt-caccgtccaccgtagaatttgcctatacttta |
415 |
Q |
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| T |
33297344 |
aagtcactgtctcaactatatgaacgaggaggaccatgagtttcaagt------aatttttattggtccaccgtccactgtagaattcgcctatatttta |
33297437 |
T |
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| Q |
416 |
tcatcaatctacatctcaaatttttatattatgtctcatttatgaactatctagttgaggtgtaagcaacatggtagactttgcatgcaatatttatgaa |
515 |
Q |
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| T |
33297438 |
tcatcaatctacatctcaaacttttatattctgtctcatttatgaactatctagttgaggtgtaagcaacatggtagactttgcatgcaatatttatgaa |
33297537 |
T |
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| Q |
516 |
ccatattatatattgtaatttaatgttacggttagactttattgccatcacaggtt |
571 |
Q |
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| T |
33297538 |
ccatat--tatattgtaatttaatgttacggttatactttattggcatcactggtt |
33297591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 35893283 - 35893347
Alignment:
| Q |
302 |
caattgacaccgattaagtcactgtctcaactatataaacgaggaggaccatgagtttctacttc |
366 |
Q |
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| T |
35893283 |
caattgacatcgatcaagtcactgtctcaactgtgaaaacgtgaaggaccgtgagcttctacttc |
35893347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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