View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12488_low_2 (Length: 457)
Name: NF12488_low_2
Description: NF12488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12488_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 2e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 42 - 219
Target Start/End: Complemental strand, 51874346 - 51874169
Alignment:
| Q |
42 |
agcataggttggttgaaccgttgaaatacgataggcttgtagagtcgctctcagaaaagcataggtcatttagagctactctaacggtcgagttggaggg |
141 |
Q |
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| T |
51874346 |
agcataggttggttgaaccgttgaaatacgataggcttgtagagtcgctctcagaaaagcataggtcatttagagctactctaacggtcgagttggaggg |
51874247 |
T |
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| Q |
142 |
tgataacagctaaggtagcannnnnnnnaatgaatactgacatggacgtccatcttattcacattaatgaatggatat |
219 |
Q |
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| T |
51874246 |
tgataacagctaaggtagcattttttttaatgaatactgacatggacgtccatcttattcacattaatgaatggatat |
51874169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 309 - 442
Target Start/End: Complemental strand, 51872234 - 51872101
Alignment:
| Q |
309 |
aataacaaatcatcaccaacccaatctggctttactgcaatgagattacaggatgcaattccagtaaaaatcactttgagtattaactaagttaccggct |
408 |
Q |
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| T |
51872234 |
aataacaaatcatcaccaacccaatctggctttactgcaatgagattacaggatgcaattccagtaaaaatcactttgagtattaactaagttaccggct |
51872135 |
T |
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| Q |
409 |
cattgtgaatttatcaaaatatcaagtcatacat |
442 |
Q |
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| T |
51872134 |
cattgtgaatttatcaaaatatcaagtcatacat |
51872101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 217 - 325
Target Start/End: Complemental strand, 51874136 - 51874028
Alignment:
| Q |
217 |
tatagtcaggttatcaattcattttgaacccattcttgtcattatcattgatagcaggggtatactaggaggattaatatgttttttacaataataacaa |
316 |
Q |
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| T |
51874136 |
tatagtcaggttatcaattcattttgaacccattcttgtcattatcattgatagcaggggtatactaggaggattaatatgttttttacaataataacaa |
51874037 |
T |
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| Q |
317 |
atcatcacc |
325 |
Q |
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| T |
51874036 |
atcatcacc |
51874028 |
T |
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