View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12488_low_4 (Length: 240)
Name: NF12488_low_4
Description: NF12488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12488_low_4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 33759034 - 33759256
Alignment:
| Q |
18 |
aaaaatgcatttcaattacagatcagttcaatcctatctatgttaaataagaaataaattaaatttgtaannnnnnnagctcaacttccttaaaattgta |
117 |
Q |
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| T |
33759034 |
aaaaatgcatttcaattacagatcagttcaatcctatctatgttaaataagaaataaattaaatttgtaatttttttagctcaacttccttaaaattgta |
33759133 |
T |
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| Q |
118 |
cttggatttattttacccgagagattaaggagtatcggaattagtataagtgtaatatattattttatagtagtataaatagagattaggctatagatga |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33759134 |
cttggatttattttacccgagagagtaaggagtatcggaattagtataagtgtaatatattattttatagtagtataaatagagattaggctatagatga |
33759233 |
T |
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| Q |
218 |
aaaggaaaagcaattaatatttt |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
33759234 |
aaaggaaaagcaattaatatttt |
33759256 |
T |
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