View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12489_high_4 (Length: 324)
Name: NF12489_high_4
Description: NF12489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12489_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 314
Target Start/End: Complemental strand, 49167236 - 49166946
Alignment:
| Q |
20 |
ccaatattagtatcggtctcagtgcttcatagctagtttgtgagactgattgagagagtttatgaagacatcttataacatgtccataatctttttacaa |
119 |
Q |
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| T |
49167236 |
ccaatattagtatcggtctcagtgcttcatagctagtttgtgagactgattgagagagtttatgaagacatcttataacatgtccataatctttttacaa |
49167137 |
T |
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| Q |
120 |
cttatttcgccaagttcttcaagacatcttatggaaacaacttatgacttatnnnnnnntagtttgactttattttttcttttattat-aaaatagctaa |
218 |
Q |
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| T |
49167136 |
cttatttcgccaagttcttcaagacatcttatggaaacaacatataacttat-----aatagtttgactttattttttcttttattataaaaatagctaa |
49167042 |
T |
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| Q |
219 |
cagataagcacatgttagatgtcagtggacaaatgtatgaggctatgagcagacttgacatctttacactttcagaagaatggatccacaggttct |
314 |
Q |
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| T |
49167041 |
cagataagcacatgttagatgtcagtggacaaatgtatgaggctatgagcagacttgacatctttacactttcagaagaatggatccaaaggttct |
49166946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 4868507 - 4868439
Alignment:
| Q |
57 |
ttgtgagactgattgagagagtttatgaagacatcttataacatgtccataatctttttacaacttattt |
126 |
Q |
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| T |
4868507 |
ttgtgagactgtttgagagagtttatgaa-acaacttatgacatgtcaataagttgttttcaacttattt |
4868439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 171
Target Start/End: Complemental strand, 2996678 - 2996567
Alignment:
| Q |
60 |
tgagactgattgagagagtttatgaagacatcttataacatgtccataatctttttacaacttatttcgccaagttcttcaagacatcttatggaaacaa |
159 |
Q |
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| T |
2996678 |
tgagactgtttgagagagcttatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagatagcttatgaaaacaa |
2996579 |
T |
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| Q |
160 |
cttatgacttat |
171 |
Q |
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| T |
2996578 |
cttataacttat |
2996567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 6987701 - 6987773
Alignment:
| Q |
55 |
gtttgtgagactgattgagagagtttatgaagacatcttataacatgtccataatctttttacaacttatttc |
127 |
Q |
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| T |
6987701 |
gtttgtgagactgtttgggagagcttatggatacaacttatgacatgtccataaactattttcaacttatttc |
6987773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 15620358 - 15620408
Alignment:
| Q |
57 |
ttgtgagactgattgagagagtttatgaagacatcttataacatgtccataa |
108 |
Q |
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| T |
15620358 |
ttgtgagattgattgagagagtttat-aaaacaacttataacatgtccataa |
15620408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 1408285 - 1408333
Alignment:
| Q |
60 |
tgagactgattgagagagtttatgaagacatcttataacatgtccataa |
108 |
Q |
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| T |
1408285 |
tgagactgtttgagagaatttatgaaaacagcttattacatgtccataa |
1408333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 31315537 - 31315569
Alignment:
| Q |
179 |
tagtttgactttattttttcttttattataaaa |
211 |
Q |
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| T |
31315537 |
tagtttgactttattttatcttttattataaaa |
31315569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 40356854 - 40356806
Alignment:
| Q |
182 |
tttgactttattttttcttttattata-aaatagctaacagataagcac |
229 |
Q |
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| T |
40356854 |
tttgactttattttatcttttattatataaatagcttatagataagcac |
40356806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 1318344 - 1318296
Alignment:
| Q |
57 |
ttgtgagactgattgagagagtttatgaagacatcttataacatgtcca |
105 |
Q |
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| T |
1318344 |
ttgtgagactgtttgtgagagcttatgaaaacatcttatgacatgtcca |
1318296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 27699490 - 27699534
Alignment:
| Q |
56 |
tttgtgagactgattgagagagtttatgaagacatcttataacat |
100 |
Q |
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| T |
27699490 |
tttgtgagactgtttgagagagtttatgaaaacaacttatgacat |
27699534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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