View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12489_low_6 (Length: 201)
Name: NF12489_low_6
Description: NF12489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12489_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 47391302 - 47391183
Alignment:
| Q |
14 |
gagcagagatggaggcctccaaattaagtgcatcagagtcggtgacagcttgcttggaagtcgcaaagaaggagaaaaaatatttgaagaaacttctagc |
113 |
Q |
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| T |
47391302 |
gagcagagatggaggcctccaaattaagtgcatcagagtcggtgacagcttgcttggaagtcgcaaagaaggagaaaaaatatttgaagaaacttctagc |
47391203 |
T |
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| Q |
114 |
ttgggaaaacagaaaaagct |
133 |
Q |
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| T |
47391202 |
ttgggaaaacagaaaaagct |
47391183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 40624828 - 40624936
Alignment:
| Q |
14 |
gagcagagatggaggcctccaaattaagtgcatcagagtcggtgacagcttgcttggaagtcgcaaagaaggagaaaaaatatttgaagaaacttctagc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |
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| T |
40624828 |
gagcagagatggaggcctccaaattaagtgcatcagagtcagtgacagcttgcttggaagttgcaaaaaaggagaaaaaatacttgaagaaacttctagc |
40624927 |
T |
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| Q |
114 |
ttgggaaaa |
122 |
Q |
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||||||||| |
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| T |
40624928 |
ttgggaaaa |
40624936 |
T |
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