View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1248Ase10 (Length: 553)
Name: NF1248Ase10
Description: NF1248-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248Ase10 |
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Alignment Details
Target: chr5 (Bit Score: 467; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 8 - 501
Target Start/End: Complemental strand, 16464572 - 16464079
Alignment:
| Q |
8 |
tacaagtggatagaaaagcttttggttggttgagggggagatggaaaactgaatgttgaacacttttaagtgcggtgtcaacctctcattcagctaactg |
107 |
Q |
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| T |
16464572 |
tacaagtggatagaaaagcttttggttggttgagggggagatggaaaactgaatgttgaacacttttaagtgtggtgtcaacctctcattcagctaactg |
16464473 |
T |
|
| Q |
108 |
tctatcattttggcaacttagaattttttatgattggtttattccgttgtgaaatttgagatctttacatgtgctgtatttttcttgatgtttgtgtaca |
207 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16464472 |
tctatcattttggcaacttagaattgtttatgattggtttattccgttgtgaaatttgagatctttacatgtgctgtatttttcttgatgtttgtgtaca |
16464373 |
T |
|
| Q |
208 |
gaacagaattggcattggttgaggaaattgcagtggatgtattaaacaagatcnttggagtatatgttggagacctagatcaacagattggtaagtatga |
307 |
Q |
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| T |
16464372 |
gaacagaattggcattggttgaggaaattgctgtggatgtactaaacaagatcaatggagtatatgttggagacctagatcaacagattggtaagtatga |
16464273 |
T |
|
| Q |
308 |
ggaacttgcgaagctccaatttcagttccatgaaagcacaactaaacttgtagatttgaacaactataatgcaactgttaaacgtatcacagaacttaaa |
407 |
Q |
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| T |
16464272 |
ggaacttgcgaagctccaatttcagttccatgaaagcacaactagacttgtagatttgaacaactataatgcaactgttaaacgtatcacagaacttaaa |
16464173 |
T |
|
| Q |
408 |
atggagagaagtcttcgtttgcttcgcttgtcaccagatatgctttcacatttagagaactcatcaaacaataataatttagttccgctaaccg |
501 |
Q |
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| T |
16464172 |
atggagagaagtcttcgtttgcttcgcttgtcaccagatatgctttcacatttagagaactcatcaaacaataataatttagttccgctaaccg |
16464079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 76 - 487
Target Start/End: Complemental strand, 16471529 - 16471115
Alignment:
| Q |
76 |
agtgcggtgtcaacctctcattcagctaactgtct--atcattttggcaacttagaatt-ttttatgattggtttattccgttgtgaaatttgagatctt |
172 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
16471529 |
agtgtggtgtcaacctctcattcagctaactgtctttatcattttggcaacttagaattgttttatgattggtttgttccgttgtgaaatttgagatctt |
16471430 |
T |
|
| Q |
173 |
tacatgtgctgtatttttcttgatgtttgtgtacagaacagaattggcattggttgaggaaattgcagtggatgtattaaacaagatcnttggagtatat |
272 |
Q |
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| T |
16471429 |
tacatgtgttgtattatgcttgatgtttgtgtacagaacagaattggcattggttgaggaaattgctgtggatgtattaaacaagatcaatggagtatat |
16471330 |
T |
|
| Q |
273 |
gttggagacctagatcaacagattggtaagtatgaggaacttgcgaagctccaatttcagttccatgaaagcacaactaaacttgtagatttgaacaact |
372 |
Q |
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| T |
16471329 |
gttggagacctagatcaacagattggtaagtatgaggaacttgcgaagctccaatttcagttccatgaaagcacaactaaacttatagatttgaacaact |
16471230 |
T |
|
| Q |
373 |
ataatgcaactgttaaacgtatcacagaacttaaaatggagagaagtcttcgtttgcttcgcttgtcaccagatatgctttcacatttagagaactcatc |
472 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
16471229 |
ataaagcaactgttaaacgtatcacagaacttaaaatggagagaagtcttcgtttgcttcgcttgtcacctgatatgctttcacatttagagaactcatc |
16471130 |
T |
|
| Q |
473 |
aaacaataataattt |
487 |
Q |
| |
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| T |
16471129 |
agacaataagaattt |
16471115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 195 - 470
Target Start/End: Complemental strand, 16493879 - 16493604
Alignment:
| Q |
195 |
atgtttgtgtacagaacagaattggcattggttgaggaaattgcagtggatgtattaaacaagatcnttggagtatatgttggagacctagatcaacaga |
294 |
Q |
| |
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||||||| | |||| |||||| ||| ||| ||||||||||| || |||| || ||||||||||| | ||||||||||||| ||||||||||| || | |
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| T |
16493879 |
atgtttgagaacaggacagaactggaattagttgaggaaatcgctatggacgttctaaacaagatcaatcgagtatatgttggtgacctagatcaccaaa |
16493780 |
T |
|
| Q |
295 |
ttggtaagtatgaggaacttgcgaagctccaatttcagttccatgaaagcacaactaaactt-gtagatttgaacaactataatgcaactgttaaacgta |
393 |
Q |
| |
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||| |||||||||||||||||| ||||| |||| ||| ||| || ||||||| || ||| || ||||||||||| |||| ||||||||| ||| | |
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| T |
16493779 |
ttgctaagtatgaggaacttgcaaagctacaatatcaattctttgtaagcaca-ctgaacaccgttgatttgaacaagcataacgcaactgttgcacgca |
16493681 |
T |
|
| Q |
394 |
tcacagaacttaaaatggagagaagtcttcgtttgcttcgcttgtcaccagatatgctttcacatttagagaactca |
470 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||| |||||| | |||||||||||| |||||||||||||| |
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| T |
16493680 |
tcacagaacttaaaatggagagaagtcttcgtctgcttcgattgtcatctgatatgctttcagatttagagaactca |
16493604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 265 - 434
Target Start/End: Complemental strand, 16499188 - 16499019
Alignment:
| Q |
265 |
gagtatatgttggagacctagatcaacagattggtaagtatgaggaacttgcgaagctccaatttcagttccatgaaagcacaactaaactt-gtagatt |
363 |
Q |
| |
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|||| |||||||| ||| |||||||| | |||| ||||||||||||||||||||||| |||| ||| ||| || |||||| || ||| || |||| |
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| T |
16499188 |
gagtttatgttggtgacttagatcaaaaaattgcaaagtatgaggaacttgcgaagctacaatatcaattctttgtgagcaca-ctgaacaccgttgatt |
16499090 |
T |
|
| Q |
364 |
tgaacaactataatgcaactgttaaacgtatcacagaacttaaaatggagagaagtcttcgtttgcttcgc |
434 |
Q |
| |
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||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16499089 |
tgaacaaacataacgcaactgttgcacgtatcacagaacttaaaatggagagaagtcttcgtttgcttcgc |
16499019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 16471611 - 16471554
Alignment:
| Q |
15 |
ggatagaaaagcttttggttggttgagggggagatggaaaactgaatgttgaacacttt |
73 |
Q |
| |
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| T |
16471611 |
ggatagaaaa-cttctggttgattgagggggagatagaaaactgaatgttgaacacttt |
16471554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 154 - 311
Target Start/End: Complemental strand, 44950366 - 44950209
Alignment:
| Q |
154 |
ttgtgaaatttgagatctttacatgtgctgtatttttcttgatgtttgtgtacagaacagaattggcattggttgaggaaattgcagtggatgtattaaa |
253 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||| |
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| T |
44950366 |
ttgtaaaatttgagatctttacatgtgctgtatttttcttaatgtttgtgtacagaacagaattggcattagttgaggaaattgctatggatgtgctaaa |
44950267 |
T |
|
| Q |
254 |
caagatcnttggagtatatgttggagacctagatcaacagattggtaagtatgaggaa |
311 |
Q |
| |
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||||||| | |||||||||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
44950266 |
caagatcaatcaagtatatgttggtgacctagatcaacagattggtaagtattaggaa |
44950209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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