View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1248Ase12 (Length: 400)

Name: NF1248Ase12
Description: NF1248-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1248Ase12
NF1248Ase12
[»] chr2 (20 HSPs)
chr2 (8-394)||(6420180-6420570)
chr2 (281-393)||(19193505-19193619)
chr2 (281-394)||(31494269-31494384)
chr2 (311-393)||(42669762-42669846)
chr2 (281-393)||(18949197-18949311)
chr2 (281-393)||(19953459-19953573)
chr2 (287-358)||(35523445-35523516)
chr2 (281-391)||(43400199-43400311)
chr2 (281-345)||(20459017-20459081)
chr2 (282-348)||(31859143-31859209)
chr2 (271-356)||(44152334-44152418)
chr2 (281-349)||(12989300-12989368)
chr2 (281-349)||(30706379-30706447)
chr2 (299-391)||(37078026-37078120)
chr2 (289-329)||(43400146-43400186)
chr2 (285-349)||(45554668-45554732)
chr2 (300-343)||(4430134-4430177)
chr2 (281-329)||(31494213-31494259)
chr2 (281-349)||(38464272-38464340)
chr2 (281-329)||(41546154-41546202)
[»] chr4 (19 HSPs)
chr4 (281-395)||(5994870-5994986)
chr4 (281-393)||(51904618-51904732)
chr4 (279-393)||(51339965-51340080)
chr4 (295-387)||(37586482-37586576)
chr4 (281-395)||(27654539-27654655)
chr4 (281-349)||(8109065-8109133)
chr4 (281-374)||(16318881-16318974)
chr4 (279-342)||(8567891-8567954)
chr4 (299-395)||(32949613-32949711)
chr4 (295-349)||(7853128-7853182)
chr4 (282-385)||(19677326-19677431)
chr4 (281-394)||(34004750-34004864)
chr4 (348-394)||(43515288-43515334)
chr4 (284-349)||(754586-754651)
chr4 (281-329)||(25719240-25719286)
chr4 (297-354)||(39401950-39402007)
chr4 (285-349)||(722266-722330)
chr4 (281-321)||(40812042-40812082)
chr4 (281-341)||(47009306-47009366)
[»] chr5 (12 HSPs)
chr5 (286-382)||(41034437-41034535)
chr5 (287-393)||(25002014-25002122)
chr5 (282-395)||(6529877-6529992)
chr5 (295-393)||(36325502-36325601)
chr5 (284-348)||(20526865-20526929)
chr5 (295-376)||(7585067-7585150)
chr5 (311-391)||(5630560-5630642)
chr5 (287-329)||(1649561-1649603)
chr5 (283-349)||(28490727-28490793)
chr5 (287-341)||(30325883-30325937)
chr5 (281-354)||(7584904-7584977)
chr5 (285-393)||(10299949-10300062)
[»] chr7 (18 HSPs)
chr7 (282-393)||(46994366-46994479)
chr7 (286-394)||(2911824-2911934)
chr7 (281-354)||(20954784-20954857)
chr7 (311-393)||(44350219-44350303)
chr7 (311-393)||(24845462-24845546)
chr7 (281-349)||(27949382-27949450)
chr7 (281-349)||(38065329-38065397)
chr7 (287-393)||(37489966-37490074)
chr7 (281-349)||(27888391-27888459)
chr7 (295-394)||(11789791-11789890)
chr7 (281-354)||(4089981-4090054)
chr7 (281-321)||(2520638-2520678)
chr7 (281-321)||(27320230-27320270)
chr7 (281-356)||(17749797-17749872)
chr7 (281-356)||(24539125-24539200)
chr7 (299-354)||(25003465-25003520)
chr7 (281-346)||(35549652-35549717)
chr7 (285-349)||(6580009-6580073)
[»] chr8 (14 HSPs)
chr8 (287-393)||(24683635-24683743)
chr8 (299-393)||(45524896-45524992)
chr8 (281-342)||(38091467-38091528)
chr8 (284-391)||(11574036-11574145)
chr8 (284-341)||(17915929-17915986)
chr8 (282-395)||(29011115-29011230)
chr8 (281-393)||(13407326-13407440)
chr8 (348-395)||(27799277-27799324)
chr8 (281-341)||(16983511-16983571)
chr8 (311-394)||(42474024-42474109)
chr8 (281-384)||(45218519-45218624)
chr8 (287-329)||(45525003-45525045)
chr8 (283-356)||(37927477-37927550)
chr8 (281-329)||(5980008-5980056)
[»] chr1 (18 HSPs)
chr1 (287-387)||(18473719-18473821)
chr1 (295-395)||(40125859-40125957)
chr1 (281-375)||(28274868-28274964)
chr1 (281-341)||(30678914-30678974)
chr1 (311-393)||(11247834-11247918)
chr1 (280-394)||(18157101-18157215)
chr1 (285-354)||(46792982-46793051)
chr1 (285-376)||(1468521-1468612)
chr1 (295-395)||(21977249-21977351)
chr1 (287-325)||(18473660-18473698)
chr1 (287-329)||(28274797-28274839)
chr1 (281-391)||(21970280-21970392)
chr1 (281-346)||(26980265-26980330)
chr1 (281-318)||(39019580-39019617)
chr1 (281-341)||(8741226-8741286)
chr1 (281-329)||(13388339-13388387)
chr1 (289-341)||(19101612-19101664)
chr1 (289-321)||(27464765-27464797)
[»] scaffold0005 (1 HSPs)
scaffold0005 (281-391)||(296902-297014)
[»] chr3 (24 HSPs)
chr3 (295-393)||(53655423-53655523)
chr3 (301-393)||(7791892-7791986)
chr3 (287-393)||(34706590-34706698)
chr3 (295-393)||(49720018-49720118)
chr3 (281-349)||(52123959-52124027)
chr3 (281-394)||(7640597-7640712)
chr3 (281-349)||(41451898-41451966)
chr3 (282-364)||(2419468-2419551)
chr3 (281-340)||(43657870-43657929)
chr3 (301-389)||(44911627-44911717)
chr3 (282-393)||(10798280-10798393)
chr3 (281-347)||(24734816-24734882)
chr3 (281-393)||(20791360-20791473)
chr3 (282-350)||(44844090-44844158)
chr3 (311-391)||(21175557-21175639)
chr3 (322-393)||(22813315-22813388)
chr3 (285-346)||(40631202-40631263)
chr3 (281-329)||(5452065-5452113)
chr3 (281-341)||(15790373-15790433)
chr3 (285-349)||(20493452-20493516)
chr3 (281-321)||(20493580-20493620)
chr3 (281-321)||(27243050-27243090)
chr3 (281-349)||(46450175-46450242)
chr3 (285-329)||(46575957-46576001)
[»] chr6 (16 HSPs)
chr6 (303-393)||(25326895-25326987)
chr6 (303-393)||(26159430-26159522)
chr6 (299-393)||(26170911-26171007)
chr6 (287-338)||(29610355-29610406)
chr6 (274-349)||(34905445-34905520)
chr6 (287-393)||(6163527-6163635)
chr6 (295-393)||(29610253-29610353)
chr6 (281-341)||(12753763-12753823)
chr6 (281-321)||(34905341-34905381)
chr6 (281-319)||(9839015-9839053)
chr6 (287-329)||(25326842-25326884)
chr6 (287-329)||(26159377-26159419)
chr6 (299-364)||(31116145-31116211)
chr6 (281-321)||(8441972-8442012)
chr6 (281-321)||(8450776-8450816)
chr6 (281-341)||(21987409-21987469)


Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 8 - 394
Target Start/End: Original strand, 6420180 - 6420570
Alignment:
Q  8 aagacctaccaacaacttaaatggatcactatctcaaatcaaagcccaaaacaaaacaatacaaattttgttgactattatttttctcacccatgtgttt 107  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6420180 aagacctaccaacaacttaaatggaccattatctcaaatcaaagcccaaaacaacacaatacaaattttgttgactattatttttctcacccatgtgttt 6420279  T
Q  108 ctcgcgcaccctattatttnnnnnnntactctttgcttgaattatacaatctgaattgttgannnnnnncattttccctaaacagacaacccaaatattt 207  Q
    |||| ||||||||||||||       ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  6420280 ctcgtgcaccctattatttaaaaaaatactctttgcttgaattatacaatctgaattgttgatttttttcattttccctaaacagacaacccaaatattt 6420379  T
Q  208 gaaatattacggttcagattatataatccaaaaagtttttgaaggtgggaaacatttcaaattataagtgat----tctagcaacactcttttttcaaca 303  Q
    |||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||     ||||||||||||| |||||||||    
T  6420380 gaaatattacagttcagattatataatccaaaaagttcctgaaggtgggaaacatttcaaattatgagtgatgctagctagcaacactctcttttcaaca 6420479  T
Q  304 ctctctccaacactcactttcttattagcttaaatcatggtgggtcacacattggaaataggtttcacttaaaatggtgggtcatacatta 394  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6420480 ctctctccaccactcactttcttattggcttaaatcatggtgggtctcacattggaaataggtttcacttaaaatggtgggtcatacatta 6420570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 281 - 393
Target Start/End: Original strand, 19193505 - 19193619
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaat 378  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||  ||| || |||||||||||||||||||||| |    
T  19193505 ctagcaacactctcttttcaacactctctccaacactcactttctaattagtttaaatcatggtgggtctcatactttggaaataggtttcacttaaagt 19193604  T
Q  379 ggtgggtcatacatt 393  Q
    |||||||||||||||    
T  19193605 ggtgggtcatacatt 19193619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 281 - 394
Target Start/End: Complemental strand, 31494384 - 31494269
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaat 378  Q
    ||||||||||||| ||||||||||||||   |||||||||||  ||||| |||||||||| ||||||  ||||||||||||||| |||| |||||||| |    
T  31494384 ctagcaacactctcttttcaacactctcctaaacactcacttcattattggcttaaatcaaggtgggtctcacacattggaaatgggttccacttaaagt 31494285  T
Q  379 ggtgggtcatacatta 394  Q
     ||||| |||||||||    
T  31494284 agtgggacatacatta 31494269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 311 - 393
Target Start/End: Original strand, 42669762 - 42669846
Alignment:
Q  311 caacactcactttcttattagcttaaatcatggtgggt--cacacattggaaataggtttcacttaaaatggtgggtcatacatt 393  Q
    ||||||||||||| | ||| ||||||||||||||||||  ||||| |||||||| ||||||||||||| ||||||||||||||||    
T  42669762 caacactcactttttaattggcttaaatcatggtgggtttcacactttggaaatgggtttcacttaaagtggtgggtcatacatt 42669846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 281 - 393
Target Start/End: Original strand, 18949197 - 18949311
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaat 378  Q
    |||| |||||||| ||||||||||| ||||||||||||| ||||| ||| |||||||||||||||||  |||||| ||  |||| |||| |||||||| |    
T  18949197 ctaggaacactctcttttcaacactttctccaacactcaatttctaattggcttaaatcatggtgggtctcacactttaaaaatgggttccacttaaagt 18949296  T
Q  379 ggtgggtcatacatt 393  Q
    | ||| |||||||||    
T  18949297 gatggatcatacatt 18949311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 281 - 393
Target Start/End: Complemental strand, 19953573 - 19953459
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtcacaca--ttggaaataggtttcacttaaaat 378  Q
    ||||||||||||| |||| |||| | ||||||| ||||||||| ||||| | ||||||||| ||| ||| ||||  |||||||| |||| |||||||| |    
T  19953573 ctagcaacactctctttttaacattttctccaatactcacttttttattggattaaatcatagtgagtctcacactttggaaatgggttccacttaaagt 19953474  T
Q  379 ggtgggtcatacatt 393  Q
    |||||||||||||||    
T  19953473 ggtgggtcatacatt 19953459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 35523516 - 35523445
Alignment:
Q  287 acactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtcacacattgg 358  Q
    ||||||| ||||||||| ||||||||||| ||||||||| ||| ||||||||||||||||| ||||||||||    
T  35523516 acactctcttttcaacattctctccaacattcactttctaatttgcttaaatcatggtgggacacacattgg 35523445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 281 - 391
Target Start/End: Complemental strand, 43400311 - 43400199
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaat 378  Q
    ||||||||||||| ||||||||||||||   |||||||| ||| ||||| | |||||||| ||||||  ||||||||||  |||||||| |||||||| |    
T  43400311 ctagcaacactctcttttcaacactctcctaaacactcattttattattggtttaaatcaaggtgggtttcacacattgataataggttccacttaaagt 43400212  T
Q  379 ggtgggtcataca 391  Q
    |||||| ||||||    
T  43400211 ggtgggacataca 43400199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 281 - 345
Target Start/End: Complemental strand, 20459081 - 20459017
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtg 345  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||| |||| |||| |||||    
T  20459081 ctagcaacactctcttttcaacactctctccaccactcactttcttattggcttgaatcgtggtg 20459017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 31859209 - 31859143
Alignment:
Q  282 tagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggt 348  Q
    |||||||||||| ||||||||||| ||| ||||| |||||||||||||| ||||||| |||||||||    
T  31859209 tagcaacactctcttttcaacactatcttcaacagtcactttcttattaacttaaattatggtgggt 31859143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 356
Target Start/End: Complemental strand, 44152418 - 44152334
Alignment:
Q  271 ataagtgattctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtcacacatt 356  Q
    |||||| || ||||||||||||||| ||||||| |||||| |||||||||||| ||||| | |||||||| |||||||| ||||||    
T  44152418 ataagtaatgctagcaacactctttgttcaacattctctctaacactcacttt-ttattggtttaaatcaaggtgggtctcacatt 44152334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 349
Target Start/End: Complemental strand, 12989368 - 12989300
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtc 349  Q
    ||||||||||||| |||| ||||||||||| || ||||||| ||||||| | ||||||||| |||||||    
T  12989368 ctagcaacactctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgggtc 12989300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 349
Target Start/End: Complemental strand, 30706447 - 30706379
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtc 349  Q
    ||||||||||||| |||||||||||||||| |||||||||||| || || | |||||| | ||||||||    
T  30706447 ctagcaacactctcttttcaacactctctcaaacactcactttattgttggtttaaattaaggtgggtc 30706379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 391
Target Start/End: Complemental strand, 37078120 - 37078026
Alignment:
Q  299 caacactctctccaacactcactttcttattagcttaaatcatggtgggtc--acacattggaaataggtttcacttaaaatggtgggtcataca 391  Q
    |||||||||||| |||||||||||  ||||| | |||||| | ||||||||  ||||||||||||| | || |||||||| ||||||| ||||||    
T  37078120 caacactctctcaaacactcacttcattattggtttaaattaaggtgggtctcacacattggaaatggattccacttaaagtggtgggacataca 37078026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 329
Target Start/End: Original strand, 43400146 - 43400186
Alignment:
Q  289 actcttttttcaacactctctccaacactcactttcttatt 329  Q
    ||||| |||||||||||||||| ||||||||||||||||||    
T  43400146 actctcttttcaacactctctctaacactcactttcttatt 43400186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 349
Target Start/End: Complemental strand, 45554732 - 45554668
Alignment:
Q  285 caacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtc 349  Q
    ||||||||| |||| |||| |||||| || ||||||||||||||| | ||||||||| |||||||    
T  45554732 caacactctcttttgaacattctctctaatactcactttcttattggtttaaatcattgtgggtc 45554668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 343
Target Start/End: Original strand, 4430134 - 4430177
Alignment:
Q  300 aacactctctccaacactcactttcttattagcttaaatcatgg 343  Q
    |||||||||| ||||||||||||| ||||| |||||||||||||    
T  4430134 aacactctcttcaacactcacttttttattggcttaaatcatgg 4430177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 31494213 - 31494259
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttatt 329  Q
    ||||||||||||| |||||||||||||||  |||||||||| |||||||    
T  31494213 ctagcaacactctcttttcaacactctct--aacactcactctcttatt 31494259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 349
Target Start/End: Complemental strand, 38464340 - 38464272
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtc 349  Q
    ||||||| ||||| |||| ||||||||||| || ||| ||| ||||||| | ||||||||| |||||||    
T  38464340 ctagcaatactctcttttgaacactctctctaatacttactctcttattggtttaaatcattgtgggtc 38464272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 41546202 - 41546154
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttatt 329  Q
    |||||| |||||| |||||||||||||||| |||| ||||| |||||||    
T  41546202 ctagcatcactctcttttcaacactctctcaaacattcactctcttatt 41546154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 281 - 395
Target Start/End: Original strand, 5994870 - 5994986
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaat 378  Q
    ||||||||| ||| ||||||||||||||||||||| ||||||||| |||  ||||||||||||||||  ||||||||||||||| |||| |||||||| |    
T  5994870 ctagcaacagtctcttttcaacactctctccaacattcactttctaattgacttaaatcatggtgggtctcacacattggaaatgggttccacttaaagt 5994969  T
Q  379 ggtgggtcatacattag 395  Q
    |||| ||||||||||||    
T  5994970 ggtgagtcatacattag 5994986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 281 - 393
Target Start/End: Original strand, 51904618 - 51904732
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaat 378  Q
    ||||||||||||| |||||||||||||||| |||||| || |||||||| |||||||||||||||||  |||||| ||| ||||||||| |||||||| |    
T  51904618 ctagcaacactctcttttcaacactctctctaacacttacattcttattggcttaaatcatggtgggtctcacactttgtaaataggttccacttaaagt 51904717  T
Q  379 ggtgggtcatacatt 393  Q
    | |||||||||||||    
T  51904718 gatgggtcatacatt 51904732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 279 - 393
Target Start/End: Original strand, 51339965 - 51340080
Alignment:
Q  279 ttctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtcacaca--ttggaaataggtttcacttaaa 376  Q
    |||||||||||||||||||| |||||||||| || |||||| ||||||||| ||||||||||| ||||||| ||||  ||||||||||||||||||||||    
T  51339965 ttctagcaacactctttttttaacactctcttca-cactcattttcttattggcttaaatcatagtgggtctcacactttggaaataggtttcacttaaa 51340063  T
Q  377 atggtgggtcatacatt 393  Q
      |||||||| ||||||    
T  51340064 gcggtgggtcgtacatt 51340080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 295 - 387
Target Start/End: Original strand, 37586482 - 37586576
Alignment:
Q  295 ttttcaacactctctccaacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaatggtgggtca 387  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||| ||| |||| || | |||||||| ||||||||||    
T  37586482 ttttcaacactctctccaacactcactttctaattagcttaaatcatggtgggtctcacactttgaaaatgggatccacttaaagtggtgggtca 37586576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 281 - 395
Target Start/End: Complemental strand, 27654655 - 27654539
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgg--gtcacacattggaaataggtttcacttaaaat 378  Q
    ||||||||||||| |||||||||||||||| |||||||| ||| ||||| | |||||||| |||||   |||||| |||||||| |||| |||||||| |    
T  27654655 ctagcaacactctcttttcaacactctctcaaacactcaatttattattggtttaaatcaaggtggatttcacacgttggaaatgggttccacttaaagt 27654556  T
Q  379 ggtgggtcatacattag 395  Q
    |||||| ||||||||||    
T  27654555 ggtgggacatacattag 27654539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 281 - 349
Target Start/End: Complemental strand, 8109133 - 8109065
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtc 349  Q
    ||||||||||||| |||| ||||||||||| || ||||||||||||||| | ||||||||| |||||||    
T  8109133 ctagcaacactctcttttgaacactctctctaatactcactttcttattggtttaaatcattgtgggtc 8109065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 374
Target Start/End: Complemental strand, 16318974 - 16318881
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcactta 374  Q
    ||||||||||||||||  ||||||||| ||||||| ||||||||| ||| |||||||||||| || |  |||||| |||||||| |||| ||||||    
T  16318974 ctagcaacactctttt--caacactctttccaacaatcactttctaattggcttaaatcatgatgagtctcacactttggaaattggttccactta 16318881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 8567954 - 8567891
Alignment:
Q  279 ttctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatg 342  Q
    ||||||||||||||| ||||||||||| |||| | |||||||||| ||| | ||||||||||||    
T  8567954 ttctagcaacactctattttcaacactttctctaccactcacttttttaatggcttaaatcatg 8567891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 395
Target Start/End: Complemental strand, 32949711 - 32949613
Alignment:
Q  299 caacactctctccaacactcactttcttattagcttaaatcatggtgggtc--acacattggaaataggtttcacttaaaatggtgggtcatacattag 395  Q
    ||||||||||| |||  |||| ||||| ||| |||||||||||||||||||  |||| ||||||||  ||| || ||||| |||||| |||||||||||    
T  32949711 caacactctctacaatgctcattttctaattggcttaaatcatggtgggtcttacactttggaaattagttccagttaaagtggtggatcatacattag 32949613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 7853182 - 7853128
Alignment:
Q  295 ttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtc 349  Q
    ||||||||||||| |||| |||||||| |||||||||||||| ||||| ||||||    
T  7853182 ttttcaacactctttccaccactcactctcttattagcttaagtcatgatgggtc 7853128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 385
Target Start/End: Complemental strand, 19677431 - 19677326
Alignment:
Q  282 tagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgg--gtcacacattggaaataggtttcacttaaaatg 379  Q
    |||||||||| | |||| |||| ||||||||||||||||||||| ||| | ||||||||| || |   |||||| ||| |||| ||||||||||||| ||    
T  19677431 tagcaacactatctttttaacaatctctccaacactcactttctaattggtttaaatcatagtagatctcacactttgaaaatgggtttcacttaaagtg 19677332  T
Q  380 gtgggt 385  Q
     |||||    
T  19677331 atgggt 19677326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 394
Target Start/End: Original strand, 34004750 - 34004864
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattag-cttaaatcatggtgggtcacacattggaaataggtttcacttaaaatg 379  Q
    ||||||||| ||| |||| ||||||||||||| |||| || || ||||| | ||||||| ||| || ||| ||| ||   ||||||||||||| ||| ||    
T  34004750 ctagcaacattctctttttaacactctctccaccacttacatttttattgggcttaaattatgatgagtctcactttaataataggtttcactaaaagtg 34004849  T
Q  380 gtgggtcatacatta 394  Q
    |||||||||||||||    
T  34004850 gtgggtcatacatta 34004864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 394
Target Start/End: Original strand, 43515288 - 43515334
Alignment:
Q  348 tcacacattggaaataggtttcacttaaaatggtgggtcatacatta 394  Q
    |||||| ||||||||| |||||||||||| ||||||| |||||||||    
T  43515288 tcacactttggaaataagtttcacttaaagtggtgggacatacatta 43515334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 349
Target Start/End: Original strand, 754586 - 754651
Alignment:
Q  284 gcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtc 349  Q
    |||||||| | |||| ||||||||||| || ||||||| ||||||| | ||||||||| |||||||    
T  754586 gcaacactttcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgggtc 754651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 25719286 - 25719240
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttatt 329  Q
    ||||||||||||||||||  |||||||||| |||||||||| |||||||    
T  25719286 ctagcaacactctttttt--acactctctcaaacactcactctcttatt 25719240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 39402007 - 39401950
Alignment:
Q  297 ttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtcacaca 354  Q
    ||||| ||||||| ||||||| ||||| ||||| |||||||||||| |||||| ||||    
T  39402007 ttcaaaactctcttcaacacttacttttttattggcttaaatcatgatgggtctcaca 39401950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 349
Target Start/End: Complemental strand, 722330 - 722266
Alignment:
Q  285 caacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtc 349  Q
    ||||||| | |||| ||||||||||| || ||||||| ||||||| | ||||||||| |||||||    
T  722330 caacactttcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgggtc 722266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 40812042 - 40812082
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcact 321  Q
    |||||||||||||||||| ||||||||||| | ||||||||    
T  40812042 ctagcaacactcttttttgaacactctctctagcactcact 40812082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 47009366 - 47009306
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcat 341  Q
    ||||||||| ||| |||| ||||| ||||| || ||||||||||||||| | |||||||||    
T  47009366 ctagcaacattctcttttgaacaccctctctaatactcactttcttattggtttaaatcat 47009306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 286 - 382
Target Start/End: Original strand, 41034437 - 41034535
Alignment:
Q  286 aacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaatggtg 382  Q
    |||||||| ||||||||||||| ||||||||||||||||| ||| |||||||||||||||||  |||||| |||||||| |||| ||||||||||||||    
T  41034437 aacactctcttttcaacactctatccaacactcactttctaattggcttaaatcatggtgggtctcacactttggaaatgggttccacttaaaatggtg 41034535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 287 - 393
Target Start/End: Original strand, 25002014 - 25002122
Alignment:
Q  287 acactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaatggtggg 384  Q
    ||||||| ||||||||||||||||||||||||||||||| ||| | ||||||||| |||||  |||||| |||||||| || | |||||||| |||||||    
T  25002014 acactctcttttcaacactctctccaacactcactttctaattggtttaaatcatagtgggtctcacactttggaaatgggctccacttaaagtggtggg 25002113  T
Q  385 tcatacatt 393  Q
    ||| |||||    
T  25002114 tcacacatt 25002122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 395
Target Start/End: Original strand, 6529877 - 6529992
Alignment:
Q  282 tagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaatg 379  Q
    |||||||||||| ||||||||||| |||| ||||||| |||| || || |||||||| | |||| |  ||||||||| ||||| |||| |||| ||||||    
T  6529877 tagcaacactctcttttcaacactttctcaaacactcgctttatttttggcttaaattaaggtgagtctcacacattagaaatgggttccactaaaaatg 6529976  T
Q  380 gtgggtcatacattag 395  Q
    ||||| ||||||||||    
T  6529977 gtgggacatacattag 6529992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 295 - 393
Target Start/End: Complemental strand, 36325601 - 36325502
Alignment:
Q  295 ttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtcacaca-ttggaaataggtttcacttaaaatggtgggtcatacatt 393  Q
    ||||||||| ||||||||||||||||||| | ||| |||||||||||||||||||  ||| ||  |||| |||| |||||||| |||||||||| |||||    
T  36325601 ttttcaacattctctccaacactcactttttaattggcttaaatcatggtgggtcttacactttaaaatgggttccacttaaagtggtgggtcacacatt 36325502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 284 - 348
Target Start/End: Complemental strand, 20526929 - 20526865
Alignment:
Q  284 gcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggt 348  Q
    ||||||||||  ||||||| ||||||||| || |||| ||||||||||||||||||||| |||||    
T  20526929 gcaacactctcctttcaaccctctctccaccattcaccttcttattagcttaaatcatgttgggt 20526865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 376
Target Start/End: Complemental strand, 7585150 - 7585067
Alignment:
Q  295 ttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtc--acacattggaaataggtttcacttaaa 376  Q
    |||||||||||||  | |||||||||||| ||||| | |||||| | |||| |||  ||||||||||||| |||||||||||||    
T  7585150 ttttcaacactcttccaaacactcactttattatttgtttaaattaaggtgagtctcacacattggaaatgggtttcacttaaa 7585067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 391
Target Start/End: Complemental strand, 5630642 - 5630560
Alignment:
Q  311 caacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaatggtgggtcataca 391  Q
    ||||||||||||| ||||| |||||||| ||||||||  ||| || ||| |||| | ||||| | ||||||||||||||||||    
T  5630642 caacactcactttattattggcttaaattatggtgggtctcatactttgaaaatggatttcattcaaaatggtgggtcataca 5630560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 329
Target Start/End: Original strand, 1649561 - 1649603
Alignment:
Q  287 acactcttttttcaacactctctccaacactcactttcttatt 329  Q
    ||||||| |||||||||||||||| |||||||||| |||||||    
T  1649561 acactctcttttcaacactctctctaacactcactatcttatt 1649603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 349
Target Start/End: Original strand, 28490727 - 28490793
Alignment:
Q  283 agcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtc 349  Q
    ||||||||||| |||| ||||||||||| || ||||||| ||||||| | |||||| || |||||||    
T  28490727 agcaacactctcttttgaacactctctctaatactcactctcttattggtttaaattattgtgggtc 28490793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 30325883 - 30325937
Alignment:
Q  287 acactcttttttcaacactctctccaacactcactttcttattagcttaaatcat 341  Q
    ||||||| |||| ||||||||||| || ||||||||||||||| | |||||||||    
T  30325883 acactctcttttgaacactctctctaatactcactttcttattggtttaaatcat 30325937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 354
Target Start/End: Complemental strand, 7584977 - 7584904
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtcacaca 354  Q
    ||||||||||||| |||||||||||||| | || |||| |||| ||||| | || ||||| |||||||| ||||    
T  7584977 ctagcaacactctgttttcaacactctcccaaatactcgctttattattggtttgaatcaaggtgggtctcaca 7584904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 393
Target Start/End: Complemental strand, 10300062 - 10299949
Alignment:
Q  285 caacactcttttttcaacactctctccaacactcactttcttatta---gcttaaatcatggtgggtc--acacattggaaataggtttcacttaaaatg 379  Q
    ||||||||| | |||||||||||||||  ||||||| |||||||||   | ||||| |||||||| ||  |||| |||||||| |||  |||| ||| ||    
T  10300062 caacactctctattcaacactctctcccccactcaccttcttattattggtttaaagcatggtggatcttacactttggaaatgggtcccactaaaagtg 10299963  T
Q  380 gtgggtcatacatt 393  Q
    ||||||||| ||||    
T  10299962 gtgggtcatgcatt 10299949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 282 - 393
Target Start/End: Original strand, 46994366 - 46994479
Alignment:
Q  282 tagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaatg 379  Q
    |||||||||||| |||| ||| ||||||| |||||||||||| ||||| |||||||||||||||||  |||||| |||||||| | | ||||||||| ||    
T  46994366 tagcaacactctctttttaacgctctctctaacactcacttttttattggcttaaatcatggtgggtctcacactttggaaatggatatcacttaaagtg 46994465  T
Q  380 gtgggtcatacatt 393  Q
    ||||||||||||||    
T  46994466 gtgggtcatacatt 46994479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 286 - 394
Target Start/End: Complemental strand, 2911934 - 2911824
Alignment:
Q  286 aacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgg--gtcacacattggaaataggtttcacttaaaatggtgg 383  Q
    |||||| | ||||||||||||||||||| ||||||||| ||||| ||||||||||||||||   |||||| || |||||||||| |||||||| || ||     
T  2911934 aacactttcttttcaacactctctccaatactcacttttttattggcttaaatcatggtggatctcacactttagaaataggttccacttaaagtgatga 2911835  T
Q  384 gtcatacatta 394  Q
    |||||||||||    
T  2911834 gtcatacatta 2911824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 281 - 354
Target Start/End: Complemental strand, 20954857 - 20954784
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtcacaca 354  Q
    ||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||||||||||| ||| ||||    
T  20954857 ctagcaacactctcttttcaacactctctcaaacactcacttttttattggcttaaatcatggtgagtctcaca 20954784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 311 - 393
Target Start/End: Complemental strand, 44350303 - 44350219
Alignment:
Q  311 caacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaatggtgggtcatacatt 393  Q
    ||||||||||||||| ||| |||||||||||||||||  |||||| |||||||| | || ||||||||||||||||||| |||||    
T  44350303 caacactcactttctaattggcttaaatcatggtgggtctcacactttggaaatggattccacttaaaatggtgggtcacacatt 44350219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 393
Target Start/End: Original strand, 24845462 - 24845546
Alignment:
Q  311 caacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaatggtgggtcatacatt 393  Q
    ||||||||||||||| ||| ||||||||||||||| |  |||||| |||||||| |||| |||||||| |||||||||| |||||    
T  24845462 caacactcactttctaattggcttaaatcatggtgagtctcacactttggaaatgggttccacttaaagtggtgggtcacacatt 24845546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 281 - 349
Target Start/End: Complemental strand, 27949450 - 27949382
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtc 349  Q
    ||||||||||||| |||| ||||||||||| || ||||||| ||||||||| ||||||||| |||||||    
T  27949450 ctagcaacactctcttttgaacactctctctaatactcactctcttattagtttaaatcattgtgggtc 27949382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 281 - 349
Target Start/End: Original strand, 38065329 - 38065397
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtc 349  Q
    ||||||||||||| | |||||||||||||| || ||||||||||||||| | |||||||| ||||||||    
T  38065329 ctagcaacactctctcttcaacactctctcaaatactcactttcttattggtttaaatcaaggtgggtc 38065397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 393
Target Start/End: Complemental strand, 37490074 - 37489966
Alignment:
Q  287 acactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaatggtggg 384  Q
    ||||||| |||||||||||||||| ||||||||||| |||||| | |||||| | ||| ||  |||||| ||||| ||  ||| ||||||| ||||||||    
T  37490074 acactctcttttcaacactctctcaaacactcacttacttattggtttaaatgaaggtcggtctcacactttggagatgagttccacttaatatggtggg 37489975  T
Q  385 tcatacatt 393  Q
     ||||||||    
T  37489974 acatacatt 37489966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 349
Target Start/End: Complemental strand, 27888459 - 27888391
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtc 349  Q
    ||||||||||||| |||| | ||||||||| |||||||||| ||||||| | ||||||||| |||||||    
T  27888459 ctagcaacactctcttttgagcactctctctaacactcactctcttattggtttaaatcattgtgggtc 27888391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 394
Target Start/End: Original strand, 11789791 - 11789890
Alignment:
Q  295 ttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtcacacattggaaataggtttcacttaaaatggtgggtcatacatta 394  Q
    ||||||||||| || | |||||||| ||| ||||| | |||||||| |||||||| ||||||||||||   || |||| ||| ||||||| |||||||||    
T  11789791 ttttcaacactttcccaaacactcattttattattggtttaaatcaaggtgggtctcacattggaaatgaattccactaaaagtggtgggacatacatta 11789890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 354
Target Start/End: Original strand, 4089981 - 4090054
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtcacaca 354  Q
    |||||| |||| | |||| |||| ||||||||||||||||||| |||| |||| ||||||||||| ||| ||||    
T  4089981 ctagcagcactttctttttaacattctctccaacactcacttttttataagctaaaatcatggtgagtctcaca 4090054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 2520638 - 2520678
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcact 321  Q
    |||| |||||||| |||||||||||||||||||||||||||    
T  2520638 ctaggaacactctcttttcaacactctctccaacactcact 2520678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 27320230 - 27320270
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcact 321  Q
    ||||||||| || ||||||||||||||||||||||||||||    
T  27320230 ctagcaacattcatttttcaacactctctccaacactcact 27320270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 356
Target Start/End: Complemental strand, 17749872 - 17749797
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtcacacatt 356  Q
    ||||||||||||| ||||  |||||||||| |||||||||| ||| ||| | ||||||||  |||||||| |||||    
T  17749872 ctagcaacactctcttttggacactctctctaacactcactctctcattgggttaaatcaatgtgggtcatacatt 17749797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 356
Target Start/End: Original strand, 24539125 - 24539200
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtcacacatt 356  Q
    ||||||||||||| ||||  |||||||||| |||||||||| ||| ||| | ||||||||  |||||||| |||||    
T  24539125 ctagcaacactctcttttggacactctctctaacactcactctctcattgggttaaatcaatgtgggtcatacatt 24539200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 354
Target Start/End: Complemental strand, 25003520 - 25003465
Alignment:
Q  299 caacactctctccaacactcactttcttattagcttaaatcatggtgggtcacaca 354  Q
    ||||||||||| ||||||||||||| ||||| |||||||| ||| |||||| ||||    
T  25003520 caacactctctgcaacactcacttttttattggcttaaattatgatgggtctcaca 25003465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 346
Target Start/End: Original strand, 35549652 - 35549717
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgg 346  Q
    ||||||||||||| |||||||||||||||| | ||||||  || ||||| |||||  |||||||||    
T  35549652 ctagcaacactctcttttcaacactctctctaccactcatctttttattggcttatttcatggtgg 35549717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 349
Target Start/End: Original strand, 6580009 - 6580073
Alignment:
Q  285 caacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtc 349  Q
    ||||||||| |||| ||||||||||| || ||||||| ||||||| | |||||| || |||||||    
T  6580009 caacactctcttttgaacactctctctaatactcactctcttattggtttaaattattgtgggtc 6580073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 287 - 393
Target Start/End: Complemental strand, 24683743 - 24683635
Alignment:
Q  287 acactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtcacaca--ttggaaataggtttcacttaaaatggtggg 384  Q
    ||||||| ||||||||||| ||||||||||||||||||| ||| |||||||||||| |||||| ||||  |||||||| |||| |||||||| |||||||    
T  24683743 acactctcttttcaacactatctccaacactcactttctgattggcttaaatcatgatgggtctcacattttggaaatgggttccacttaaagtggtggg 24683644  T
Q  385 tcatacatt 393  Q
    ||| |||||    
T  24683643 tcacacatt 24683635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 299 - 393
Target Start/End: Original strand, 45524896 - 45524992
Alignment:
Q  299 caacactctctccaacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaatggtgggtcatacatt 393  Q
    ||||||||||||||||||||||||| | ||| |||||||||||||||||  |||||| |||||||| |||| |||| ||| ||||||||||||||||    
T  45524896 caacactctctccaacactcactttttaattggcttaaatcatggtgggtttcacactttggaaatgggttccactcaaagtggtgggtcatacatt 45524992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 281 - 342
Target Start/End: Complemental strand, 38091528 - 38091467
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatg 342  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  38091528 ctagcaacattctcttttcaacactctctccaacactcactttctaattggcttaaatcatg 38091467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 284 - 391
Target Start/End: Original strand, 11574036 - 11574145
Alignment:
Q  284 gcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtc--acacattggaaataggtttcacttaaaatggt 381  Q
    |||||||| | ||||||||||||| ||  |||||||| |  ||||| |||||||||| ||||||||  |||||||| |||| ||||||||||||||| ||    
T  11574036 gcaacactttcttttcaacactctttcatacactcacctcattattggcttaaatcaaggtgggtctcacacattgaaaattggtttcacttaaaatagt 11574135  T
Q  382 gggtcataca 391  Q
    ||| ||||||    
T  11574136 gggacataca 11574145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 17915986 - 17915929
Alignment:
Q  284 gcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcat 341  Q
    ||||||||||||||| ||||||||||| || ||||||||| ||||||| |||||||||    
T  17915986 gcaacactcttttttaaacactctctctaatactcactttattattagtttaaatcat 17915929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 395
Target Start/End: Complemental strand, 29011230 - 29011115
Alignment:
Q  282 tagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtcacaca--ttggaaataggtttcacttaaaatg 379  Q
    |||||| ||||| |||||||||||||||| |||||||||||  ||||| | |||||||  |||| ||||||||  |||||||| |||| || | ||| ||    
T  29011230 tagcaatactctattttcaacactctctcaaacactcacttctttattggtttaaatcgaggtgagtcacacactttggaaatgggttccattcaaagtg 29011131  T
Q  380 gtgggtcatacattag 395  Q
    || || ||||||||||    
T  29011130 gtaggacatacattag 29011115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 393
Target Start/End: Original strand, 13407326 - 13407440
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtc--acacattggaaataggtttcacttaaaat 378  Q
    ||||||||||||| |||| ||||||||||| |||||||| | ||| ||| | ||||||||  |||||||  |||| ||| ||||||    ||||||||||    
T  13407326 ctagcaacactctcttttgaacactctctctaacactcattctctcattgggttaaatcaatgtgggtcatacactttgaaaatagaacccacttaaaat 13407425  T
Q  379 ggtgggtcatacatt 393  Q
    |||||| ||||||||    
T  13407426 ggtgggacatacatt 13407440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 395
Target Start/End: Original strand, 27799277 - 27799324
Alignment:
Q  348 tcacacattggaaataggtttcacttaaaatggtgggtcatacattag 395  Q
    |||||||||||||||||||| |||||||| ||||||| ||||||||||    
T  27799277 tcacacattggaaataggttccacttaaagtggtgggacatacattag 27799324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 16983571 - 16983511
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcat 341  Q
    ||||||||||||| |||| ||||||||||| || ||||||| ||||||| | |||||||||    
T  16983571 ctagcaacactctcttttgaacactctctctaatactcactctcttattggtttaaatcat 16983511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 394
Target Start/End: Complemental strand, 42474109 - 42474024
Alignment:
Q  311 caacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaatggtgggtcatacatta 394  Q
    |||||||||||| || ||||||||||||||| |||||  |||||| ||| ||||   || |||||||| |||||||||| ||||||    
T  42474109 caacactcacttcctaattagcttaaatcatagtgggtctcacactttgaaaatgaattccacttaaagtggtgggtcaaacatta 42474024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 384
Target Start/End: Original strand, 45218519 - 45218624
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgg--gtcacacattggaaataggtttcacttaaaat 378  Q
    ||||||||||||| |||||||||||||| | |||||||  ||  ||||| | |||||||| |||||   |||||  |||||||| |||| |||||||| |    
T  45218519 ctagcaacactctcttttcaacactctcccaaacactctattctttattggtttaaatcaaggtggtcctcacattttggaaatgggttccacttaaagt 45218618  T
Q  379 ggtggg 384  Q
    ||||||    
T  45218619 ggtggg 45218624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 329
Target Start/End: Complemental strand, 45525045 - 45525003
Alignment:
Q  287 acactcttttttcaacactctctccaacactcactttcttatt 329  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||    
T  45525045 acactctcttttcaacactctcttcaacactcattttcttatt 45525003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 37927477 - 37927550
Alignment:
Q  283 agcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtcacacatt 356  Q
    |||| |||||| |||| |||| ||||||||| ||||| ||| ||||| ||||||||||| ||| ||| ||||||    
T  37927477 agcagcactctctttttaacattctctccaatactcatttttttattggcttaaatcatagtgagtctcacatt 37927550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 5980056 - 5980008
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttatt 329  Q
    ||||||||||||| |||| ||||||||||| || ||||||| |||||||    
T  5980056 ctagcaacactctcttttgaacactctctctaatactcactctcttatt 5980008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 287 - 387
Target Start/End: Complemental strand, 18473821 - 18473719
Alignment:
Q  287 acactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaatggtggg 384  Q
    ||||||| ||||||||||||||| ||||||||||||||| ||| |||||||||||||||||  |||||| ||| |||| |||| |||||||| ||| |||    
T  18473821 acactctcttttcaacactctcttcaacactcactttctaattggcttaaatcatggtgggtctcacactttgaaaatgggttccacttaaagtggcggg 18473722  T
Q  385 tca 387  Q
    |||    
T  18473721 tca 18473719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 295 - 395
Target Start/End: Original strand, 40125859 - 40125957
Alignment:
Q  295 ttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtcacacattggaaataggtttcacttaaaatggtgggtcatacatta 394  Q
    ||||||||||||||||||||| ||||||||| |||  ||||||| |||||   |||||| |||||||| | || |||||||| |||||||||||||||||    
T  40125859 ttttcaacactctctccaacattcactttctaattgacttaaattatggt--ctcacactttggaaatggattccacttaaagtggtgggtcatacatta 40125956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 375
Target Start/End: Complemental strand, 28274964 - 28274868
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaa 375  Q
    |||| |||||||| |||||||||||||||  ||||| |||||| ||||| | |||||||| ||||||  ||||||||||||||| |||| |||||||    
T  28274964 ctagtaacactctcttttcaacactctcttaaacacccactttattattggtttaaatcaaggtgggtctcacacattggaaatgggttccacttaa 28274868  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 30678914 - 30678974
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcat 341  Q
    |||||||||||||||||| | ||||||||| |||||||||| ||||||| |||||||||||    
T  30678914 ctagcaacactcttttttgagcactctctctaacactcactctcttattggcttaaatcat 30678974  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 393
Target Start/End: Complemental strand, 11247918 - 11247834
Alignment:
Q  311 caacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaatggtgggtcatacatt 393  Q
    ||||||||| ||| | ||| |||||||||||||||||  |||||| ||| |||| |||| ||||||||||||||| ||| |||||    
T  11247918 caacactcattttttaattggcttaaatcatggtgggtctcacactttgaaaatgggttccacttaaaatggtggatcacacatt 11247834  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 394
Target Start/End: Complemental strand, 18157215 - 18157101
Alignment:
Q  280 tctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaa 377  Q
    |||||||||||||| ||||||||| |||||| || |||||||| |||||| | || |||||  |||||  |||||| ||||||||  ||| ||||||||     
T  18157215 tctagcaacactctcttttcaacattctctcaaatactcacttccttatt-ggtttaatca-agtgggtctcacactttggaaatgtgttccacttaaag 18157118  T
Q  378 tggtgggtcatacatta 394  Q
    ||||||| |||||||||    
T  18157117 tggtgggacatacatta 18157101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 354
Target Start/End: Complemental strand, 46793051 - 46792982
Alignment:
Q  285 caacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtcacaca 354  Q
    ||||||| | ||||||||||||| |  |||||| ||||| ||||| ||||||||||||||||||| ||||    
T  46793051 caacactatcttttcaacactctttttaacacttacttttttattggcttaaatcatggtgggtctcaca 46792982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 376
Target Start/End: Complemental strand, 1468612 - 1468521
Alignment:
Q  285 caacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtc--acacattggaaataggtttcacttaaa 376  Q
    ||||||||| || |||||||||||   ||||||||| |  ||||| | |||||||| ||||||||  |||||||||||||||||| ||||||||    
T  1468612 caacactctcttgtcaacactctca--aacactcacctcattatttgtttaaatcaaggtgggtctcacacattggaaataggttccacttaaa 1468521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 395
Target Start/End: Complemental strand, 21977351 - 21977249
Alignment:
Q  295 ttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtc--acacattggaaataggtttcacttaaaatggtgggtcatacat 392  Q
    |||| |||||||||   |||||||||||| ||||| | |||||||| | | ||||  ||||||||||||| |||| |||||||| | ||||| |||||||    
T  21977351 tttttaacactctcataaacactcactttattattggtttaaatcaagataggtctcacacattggaaatgggttccacttaaagtagtgggacatacat 21977252  T
Q  393 tag 395  Q
    |||    
T  21977251 tag 21977249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 325
Target Start/End: Original strand, 18473660 - 18473698
Alignment:
Q  287 acactcttttttcaacactctctccaacactcactttct 325  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  18473660 acactctcttttcaacactctcttcaacactcactttct 18473698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 329
Target Start/End: Original strand, 28274797 - 28274839
Alignment:
Q  287 acactcttttttcaacactctctccaacactcactttcttatt 329  Q
    ||||||| |||||||||||||||| |||||||||| |||||||    
T  28274797 acactctcttttcaacactctctctaacactcactctcttatt 28274839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 391
Target Start/End: Original strand, 21970280 - 21970392
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaat 378  Q
    ||||||||||||| |||| |||| ||||   || ||||||||  ||||| | |||||||| | ||||  |||||||||| |||| |||| |||||||| |    
T  21970280 ctagcaacactctcttttaaacattctcataaatactcacttcattattggtttaaatcaagatgggtctcacacattgaaaatgggttccacttaaagt 21970379  T
Q  379 ggtgggtcataca 391  Q
    |||||| ||||||    
T  21970380 ggtgggacataca 21970392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 346
Target Start/End: Original strand, 26980265 - 26980330
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgg 346  Q
    ||||||||||||| |||||||||||||||  || ||||||| |||||||   ||||||||| ||||    
T  26980265 ctagcaacactctcttttcaacactctctataatactcactctcttattgatttaaatcattgtgg 26980330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 318
Target Start/End: Original strand, 39019580 - 39019617
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactc 318  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  39019580 ctagcaacactctcttttcaacactctctcaaacactc 39019617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 8741226 - 8741286
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcat 341  Q
    ||||||||||||| |||| |||| | |||| || ||||||| ||||||||| |||||||||    
T  8741226 ctagcaacactctcttttgaacaatttctctaatactcactctcttattagtttaaatcat 8741286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 13388339 - 13388387
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttatt 329  Q
    ||||||||||||| |||| || |||||||| |||||||||||| |||||    
T  13388339 ctagcaacactctcttttgaatactctctctaacactcacttttttatt 13388387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 19101612 - 19101664
Alignment:
Q  289 actcttttttcaacactctctccaacactcactttcttattagcttaaatcat 341  Q
    ||||| |||| ||||||||||| || ||||||||||||||| | |||||||||    
T  19101612 actctcttttgaacactctctctaatactcactttcttattggtttaaatcat 19101664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 321
Target Start/End: Complemental strand, 27464797 - 27464765
Alignment:
Q  289 actcttttttcaacactctctccaacactcact 321  Q
    |||||||||||||||||||||| ||||||||||    
T  27464797 actcttttttcaacactctctctaacactcact 27464765  T

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Target: scaffold0005 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 281 - 391
Target Start/End: Complemental strand, 297014 - 296902
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaat 378  Q
    ||||||||||||| |||||||||||||||| |||||||||||  ||||| | |||||| | ||||||  ||||||||||||||| |||| |||||||  |    
T  297014 ctagcaacactctcttttcaacactctctcaaacactcacttcattattggtttaaatgaaggtgggtctcacacattggaaatgggttccacttaaggt 296915  T
Q  379 ggtgggtcataca 391  Q
    |||||| ||||||    
T  296914 ggtgggacataca 296902  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 295 - 393
Target Start/End: Original strand, 53655423 - 53655523
Alignment:
Q  295 ttttcaacactctctccaacactcactttcttattagcttaaatcatggtgg--gtcacacattggaaataggtttcacttaaaatggtgggtcatacat 392  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||| || |   |||||| ||| |||| |||| ||||||||||||||||||| ||||    
T  53655423 ttttcaacactctctccaacactcactttctaattggcttaaatcatagttgatctcacactttgaaaatgggttccacttaaaatggtgggtcacacat 53655522  T
Q  393 t 393  Q
    |    
T  53655523 t 53655523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 301 - 393
Target Start/End: Complemental strand, 7791986 - 7791892
Alignment:
Q  301 acactctctccaacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaatggtgggtcatacatt 393  Q
    ||||||||||||||||||||||||| ||| ||||||||||  |||||  |||||| |||||||||| || |||||||| |||||||||| |||||    
T  7791986 acactctctccaacactcactttctaattggcttaaatcacagtgggtctcacactttggaaatagattccacttaaagtggtgggtcacacatt 7791892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 287 - 393
Target Start/End: Original strand, 34706590 - 34706698
Alignment:
Q  287 acactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgg--gtcacacattggaaataggtttcacttaaaatggtggg 384  Q
    ||||||| |||| |||||| |||||||||| |||||||| ||| ||||||||||||||||   |||||| |||||||| |||| | |||||| |||||||    
T  34706590 acactctcttttgaacactatctccaacacccactttctaatttgcttaaatcatggtggatctcacactttggaaatgggttccgcttaaagtggtggg 34706689  T
Q  385 tcatacatt 393  Q
    ||| |||||    
T  34706690 tcacacatt 34706698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 393
Target Start/End: Original strand, 49720018 - 49720118
Alignment:
Q  295 ttttcaacactctctccaacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaatggtgggtcatacat 392  Q
    ||||||||  |||||| ||||||||||| |||||||| |||||| | ||||||  |||||| |||||||| |||| ||||||||||||||||  ||||||    
T  49720018 ttttcaacgttctctcaaacactcacttgcttattagtttaaatgaaggtgggtctcacactttggaaatgggttccacttaaaatggtgggatatacat 49720117  T
Q  393 t 393  Q
    |    
T  49720118 t 49720118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 281 - 349
Target Start/End: Original strand, 52123959 - 52124027
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtc 349  Q
    ||||||||||||| |||| ||||||||||| || ||||||||||||||| | ||||||||| |||||||    
T  52123959 ctagcaacactctcttttgaacactctctctaatactcactttcttattggtttaaatcattgtgggtc 52124027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 394
Target Start/End: Original strand, 7640597 - 7640712
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaat 378  Q
    |||| |||||||| |||||||||||||| | ||||||||||| |||||| | || ||||| |||| |  |||||| | ||||||||||| |||||||  |    
T  7640597 ctagtaacactctcttttcaacactctcacaaacactcacttccttattggtttcaatcaaggtgagtctcacacttaggaaataggttccacttaatgt 7640696  T
Q  379 ggtgggtcatacatta 394  Q
    ||| || |||||||||    
T  7640697 ggtaggacatacatta 7640712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 349
Target Start/End: Original strand, 41451898 - 41451966
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtc 349  Q
    ||||||||||||| |||| ||||||||||| || ||||||| ||||||| | ||||||||| |||||||    
T  41451898 ctagcaacactctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgggtc 41451966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 364
Target Start/End: Original strand, 2419468 - 2419551
Alignment:
Q  282 tagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtc-acacattggaaatag 364  Q
    |||||||| | |||||| |||||| |||  || ||||||||||||||| | ||||||||| ||||||| |||||||||||||||    
T  2419468 tagcaacattgttttttgaacactttctttaatactcactttcttattggtttaaatcattgtgggtctacacattggaaatag 2419551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 340
Target Start/End: Complemental strand, 43657929 - 43657870
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatca 340  Q
    ||||||||||||| |||| |||||| | ||||||||||||||||| ||| ||||||||||    
T  43657929 ctagcaacactctctttttaacactgtttccaacactcactttctaattggcttaaatca 43657870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 389
Target Start/End: Original strand, 44911627 - 44911717
Alignment:
Q  301 acactctctccaacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaatggtgggtcata 389  Q
    ||||||| ||||||||||||||| | ||| |||||||||||||||||  ||| || || |||||| ||| |||||||| ||||| ||||||    
T  44911627 acactctatccaacactcactttttaattggcttaaatcatggtgggtctcatactttagaaatatgttccacttaaattggtgtgtcata 44911717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 393
Target Start/End: Original strand, 10798280 - 10798393
Alignment:
Q  282 tagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaatg 379  Q
    |||||||||||  ||||||||||||| | ||||| | ||||| | ||| |||||||| || |||||  ||| || ||||||||  ||| |||||||| ||    
T  10798280 tagcaacactcacttttcaacactcttttcaacatttactttttaattggcttaaattattgtgggtctcatactttggaaatgagttccacttaaagtg 10798379  T
Q  380 gtgggtcatacatt 393  Q
    ||||||||||||||    
T  10798380 gtgggtcatacatt 10798393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 347
Target Start/End: Complemental strand, 24734882 - 24734816
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtggg 347  Q
    ||||||||||||| |||| ||||||||||| || ||||||| ||||||| | ||||||||| |||||    
T  24734882 ctagcaacactctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtggg 24734816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 393
Target Start/End: Complemental strand, 20791473 - 20791360
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtc-acacattggaaataggtttcacttaaaatg 379  Q
    |||||| |||||| |||| ||||||||||| || ||||||||||||||| | ||||||||| | || || |||| ||||||||||   || | |||| ||    
T  20791473 ctagcaccactctcttttgaacactctctctaatactcactttcttattggtttaaatcattgcggatctacactttggaaatagaactcgcataaagtg 20791374  T
Q  380 gtgggtcatacatt 393  Q
    ||||| ||||||||    
T  20791373 gtgggacatacatt 20791360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 44844158 - 44844090
Alignment:
Q  282 tagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtca 350  Q
    |||||| ||||| ||||  |||||||||| |||||||||||| ||||| | ||||||||| ||||||||    
T  44844158 tagcaagactctctttttgacactctctctaacactcacttttttattggattaaatcattgtgggtca 44844090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 391
Target Start/End: Complemental strand, 21175639 - 21175557
Alignment:
Q  311 caacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaatggtgggtcataca 391  Q
    ||||||||||||| ||||| |||||||| ||||||||  ||| || ||| |||| | ||||| | ||||||||||||||||||    
T  21175639 caacactcactttattattggcttaaattatggtgggtctcatactttgaaaatggatttcattcaaaatggtgggtcataca 21175557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 393
Target Start/End: Original strand, 22813315 - 22813388
Alignment:
Q  322 ttcttattagcttaaatcatggtgggtcacaca--ttggaaataggtttcacttaaaatggtgggtcatacatt 393  Q
    |||||||| ||||||||||||||| ||| ||||  || ||||| |||| |||| ||| ||||||||||||||||    
T  22813315 ttcttattggcttaaatcatggtgagtctcacactttcgaaatgggttccactaaaagtggtgggtcatacatt 22813388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 346
Target Start/End: Original strand, 40631202 - 40631263
Alignment:
Q  285 caacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgg 346  Q
    ||||||||  |||||||||| ||||| |||||| || || ||||| ||||||||||||||||    
T  40631202 caacactcacttttcaacacactctctaacacttacatttttattggcttaaatcatggtgg 40631263  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 5452065 - 5452113
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttatt 329  Q
    ||||||||||||| |||| |||||||||||||| |||| || |||||||    
T  5452065 ctagcaacactctcttttgaacactctctccaatactcgctctcttatt 5452113  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 15790373 - 15790433
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcat 341  Q
    |||||||||||||||||| || | |||||| || ||||||| ||||||| | |||||||||    
T  15790373 ctagcaacactcttttttgaataatctctctaatactcactctcttattggtttaaatcat 15790433  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 349
Target Start/End: Original strand, 20493452 - 20493516
Alignment:
Q  285 caacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtc 349  Q
    ||||||||| |||| ||||||||||| |  ||||||| ||||||| | ||||||||| |||||||    
T  20493452 caacactctcttttgaacactctctctattactcactctcttattggtttaaatcattgtgggtc 20493516  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 20493620 - 20493580
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcact 321  Q
    ||||||||||||  |||||||||||||||| ||||||||||    
T  20493620 ctagcaacactcacttttcaacactctctctaacactcact 20493580  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 27243050 - 27243090
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcact 321  Q
    ||||||||||||| |||| ||||||||||| ||||||||||    
T  27243050 ctagcaacactctcttttgaacactctctctaacactcact 27243090  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 349
Target Start/End: Complemental strand, 46450242 - 46450175
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtc 349  Q
    |||||||| |||| |||| ||||||||||| || ||||||| ||||||| | ||||||||| |||||||    
T  46450242 ctagcaacgctctatttt-aacactctctctaatactcactctcttattggtttaaatcattgtgggtc 46450175  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 46575957 - 46576001
Alignment:
Q  285 caacactcttttttcaacactctctccaacactcactttcttatt 329  Q
    ||||||||| | |||||||||||||| |||||||||| |||||||    
T  46575957 caacactctctcttcaacactctctcaaacactcactctcttatt 46576001  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 303 - 393
Target Start/End: Complemental strand, 25326987 - 25326895
Alignment:
Q  303 actctctccaacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaatggtgggtcatacatt 393  Q
    ||||||||||||||||||||| | |||||||||||| ||||||||  |  ||| |||||||| |||| |||||||| ||||||||||||||||    
T  25326987 actctctccaacactcactttttaattagcttaaattatggtgggttttgcactttggaaatgggttccacttaaagtggtgggtcatacatt 25326895  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 303 - 393
Target Start/End: Complemental strand, 26159522 - 26159430
Alignment:
Q  303 actctctccaacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaatggtgggtcatacatt 393  Q
    ||||||||||||||||||||| | |||||||||||| ||||||||  |  ||| |||||||| |||| |||||||| ||||||||||||||||    
T  26159522 actctctccaacactcactttttaattagcttaaattatggtgggttttgcactttggaaatgggttccacttaaagtggtgggtcatacatt 26159430  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 299 - 393
Target Start/End: Original strand, 26170911 - 26171007
Alignment:
Q  299 caacactctctccaacactcactttcttattagcttaaatcatggtgggt--cacacattggaaataggtttcacttaaaatggtgggtcatacatt 393  Q
    ||||||||||||||||||||||||| | | |  ||||||| |||||||||  ||||| |||||||| |||| |||||||| ||||||||||||||||    
T  26170911 caacactctctccaacactcactttttaactgacttaaattatggtgggtttcacactttggaaatgggttccacttaaagtggtgggtcatacatt 26171007  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 338
Target Start/End: Complemental strand, 29610406 - 29610355
Alignment:
Q  287 acactcttttttcaacactctctccaacactcactttcttattagcttaaat 338  Q
    ||||||| |||||||||||||||| ||||||||||| |||||||| ||||||    
T  29610406 acactctcttttcaacactctctcaaacactcacttgcttattagtttaaat 29610355  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 349
Target Start/End: Complemental strand, 34905520 - 34905445
Alignment:
Q  274 agtgattctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtgggtc 349  Q
    |||||| ||||||||||||| |||| ||||| ||||| || ||||||| ||||||| | ||||||||| |||||||    
T  34905520 agtgatgctagcaacactctcttttgaacaccctctctaatactcactctcttattggtttaaatcattgtgggtc 34905445  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 393
Target Start/End: Original strand, 6163527 - 6163635
Alignment:
Q  287 acactcttttttcaacactctctccaacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaatggtggg 384  Q
    ||||||| ||||||| | |||||| |||||||||||| | ||| ||||||||||| ||| |  |||||| ||||||||  |||  ||||||| |||||||    
T  6163527 acactctcttttcaatattctctctaacactcactttttaattggcttaaatcatagtgcgtctcacactttggaaatgagttctacttaaagtggtggg 6163626  T
Q  385 tcatacatt 393  Q
    ||| |||||    
T  6163627 tcaaacatt 6163635  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 393
Target Start/End: Original strand, 29610253 - 29610353
Alignment:
Q  295 ttttcaacactctctccaacactcactttcttattagcttaaatcatggtggg--tcacacattggaaataggtttcacttaaaatggtgggtcatacat 392  Q
    |||||||||||||||| |||||||||||  || || | |||||| |  |||||  ||||||||| ||||| |||| |||||||| ||||||| |||||||    
T  29610253 ttttcaacactctctcaaacactcacttgattgttggtttaaatgaatgtgggtctcacacattagaaattggttccacttaaagtggtgggacatacat 29610352  T
Q  393 t 393  Q
    |    
T  29610353 t 29610353  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 12753763 - 12753823
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcat 341  Q
    ||||||||||||| |||||||||||||||| || |||| || | ||||||| |||||||||    
T  12753763 ctagcaacactctcttttcaacactctctctaatactcgctcttttattagtttaaatcat 12753823  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 34905341 - 34905381
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcact 321  Q
    |||||||||||| ||||||||||||||||| ||||||||||    
T  34905341 ctagcaacactcatttttcaacactctctctaacactcact 34905381  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 319
Target Start/End: Complemental strand, 9839053 - 9839015
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactca 319  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  9839053 ctagcaacactctcttttcaacactctctcaaacactca 9839015  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 329
Target Start/End: Original strand, 25326842 - 25326884
Alignment:
Q  287 acactcttttttcaacactctctccaacactcactttcttatt 329  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||    
T  25326842 acactctcttttcaacactctcttcaacactcattttcttatt 25326884  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 329
Target Start/End: Original strand, 26159377 - 26159419
Alignment:
Q  287 acactcttttttcaacactctctccaacactcactttcttatt 329  Q
    ||||||| ||||||||||||||| ||||||||| |||||||||    
T  26159377 acactctcttttcaacactctcttcaacactcattttcttatt 26159419  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 364
Target Start/End: Original strand, 31116145 - 31116211
Alignment:
Q  299 caacactctctccaacactcactttcttattagcttaaatcatggtggg-tcacacattggaaatag 364  Q
    |||||||||||| || ||||||| ||||||| | ||||||||| ||||| | |||||||||||||||    
T  31116145 caacactctctctaatactcactctcttattggtttaaatcattgtgggtttacacattggaaatag 31116211  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 8442012 - 8441972
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcact 321  Q
    |||||| ||||| ||||||||||||||||| ||||||||||    
T  8442012 ctagcagcactcatttttcaacactctctctaacactcact 8441972  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 8450816 - 8450776
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcact 321  Q
    |||||| ||||| ||||||||||||||||| ||||||||||    
T  8450816 ctagcagcactcatttttcaacactctctctaacactcact 8450776  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 21987469 - 21987409
Alignment:
Q  281 ctagcaacactcttttttcaacactctctccaacactcactttcttattagcttaaatcat 341  Q
    |||||| ||| || |||| ||||||||||| || ||||||||||||||| | |||||||||    
T  21987469 ctagcaccaccctcttttgaacactctctctaatactcactttcttattggtttaaatcat 21987409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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