View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1248Ase13 (Length: 779)
Name: NF1248Ase13
Description: NF1248-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248Ase13 |
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Alignment Details
Target: chr1 (Bit Score: 607; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 7 - 673
Target Start/End: Original strand, 45647947 - 45648612
Alignment:
| Q |
7 |
taatctcataacttacattgaaccacctttttatgcatattttgtcggataagttgcttgtatttttatttttgaaaagagaatgcggcattctagttat |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45647947 |
taatctcataacttacattgaaccacctttttatgcatattttgtaggataagttgcttgtatttttatttttgaaaagagaatgcggcattctagttat |
45648046 |
T |
|
| Q |
107 |
tagtactccttcaaaatggagagtacaatgtgaattgcctaagtaaactaatattgtcccttgttgcaggtgcccacggctcaaacgacttgttctgccg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45648047 |
tagtactccttcaaaatggagagtacaatgtgaattgcctaagtaa-ctaatcttgtcccttgttgcaggtgcccacggctcaaacgccttgttctgccg |
45648145 |
T |
|
| Q |
207 |
gcttggaacagaattaaaagtacaggaatgtgcaaggcaatccgttcctggaaagagctggagtctttgacaatgcctactatagaaaacgcgccatatt |
306 |
Q |
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| T |
45648146 |
gcttggaacagaattaaaagtacaggaatgtgcaaggcaatccgttcctggaaagagctggagtctttgacaatgcctactatagaaaacgcgccatatt |
45648245 |
T |
|
| Q |
307 |
ttctagatgaaattgcaacaaactgcaagaacttcagtgaactcaagattatggggccatgtaacatcttctttgcttcaattcttgctacatattttcc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45648246 |
ttctagatgaaattgcaacaaactgcaagaacttcagtgaactcaagattatggggccatgtaacatcttctttgcttcaattcttgctacatattttcc |
45648345 |
T |
|
| Q |
407 |
aaaattgagagtcttgagccttcggtgctcaaccctatacagagatgttctcattttcatcctagacagcttagaacatttagaagtgctcaacatatcg |
506 |
Q |
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| T |
45648346 |
aaaattgagagtcttgagccttcggtgctcaaccctatacagagatgttctcattttcatcctagacagcttagaacatttagaagtgctcaacatatca |
45648445 |
T |
|
| Q |
507 |
cattgcattctaatggaaggtctcccccctcctcactatnnnnnnnttatcaatgaaattgattctactattcgccaaaaggcttctcgattgcgcgaat |
606 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45648446 |
cattgcattctaatggaaggtctcccccctcctcactataaaaaaattatcaatgaaattgattctactattcgccaaaaggcttctcgattgcgcgaat |
45648545 |
T |
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| Q |
607 |
ttatcacatgcatggatgactcgtgcatcatgggnccacgtacaagaactgatgaagggatagttag |
673 |
Q |
| |
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|||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||| |||| |
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| T |
45648546 |
ttatcacatgcatggatgactcgtgcatcatgtgccaacgtacaagaactgatgaagggataattag |
45648612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 53 - 673
Target Start/End: Original strand, 45642972 - 45643593
Alignment:
| Q |
53 |
ggataagttgcttgtatttttatttttgaaaagagaatgcggcattc-----tagttattagtactccttcaaaatggagagtacaatgtgaattgccta |
147 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||| || ||||||||| | ||| ||| ||| | || |
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| T |
45642972 |
ggataagttgcttgtatttttatttttgaaaagagaatgcggcactccttgctagttattaacact---tccaaatggagattgcaacgtggattactta |
45643068 |
T |
|
| Q |
148 |
agtaaactaatattgtcccttgttgcaggtgcccacggctcaaacgacttgttctgccggcttggaacagaattaaaagtacaggaatgtgcaaggcaat |
247 |
Q |
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| ||| ||||| | | ||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45643069 |
aataa-ctaatctcgccccttgttgtaggtgcccacatctcaaacgactggttctgccggcttggaacagaattaaaagaacaggaatgtgcaaggcaat |
45643167 |
T |
|
| Q |
248 |
ccgttcctggaaagagctggagtctttgacaatgcctactatagaaaacgcgccatattttctagatgaaattgcaacaaactgcaagaacttcagtgaa |
347 |
Q |
| |
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||||| |||||||||||| |||||| | |||||||||| ||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45643168 |
ccgttgctggaaagagctagagtctctaacaatgcctagtatagcaaacccgccatattttctagaggaaattgcaacaaactgcaagaacttcagtgaa |
45643267 |
T |
|
| Q |
348 |
ctcaagattatggggccatgtaacatcttctttgcttcaattcttgctacatattttccaaaattgagagtcttgagccttcggtgctcaaccctataca |
447 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||| ||| | |||||||||||||| |||||||||||||||| ||||| ||||| | |
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| T |
45643268 |
ctcaagattatggggccatgtgacatcttctttgcttcaactcttgctgcatttgttccaaaattgagattcttgagccttcggtgttcaacgctatata |
45643367 |
T |
|
| Q |
448 |
gagatgttctcattttcatcctagacagcttagaacatttagaagtgctcaacatatcgcattgcattctaatggaaggtctcccccctcctcactatnn |
547 |
Q |
| |
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| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||| || |
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| T |
45643368 |
gggatgttctcattctcatcctagacagcttagaacatttagaagtgctcaatatatcacattgcattctaatggaatgtctcccccctcctcaacataa |
45643467 |
T |
|
| Q |
548 |
nnnnnttatcaatgaaattgattctactattcgccaaaaggcttctcgattgcgcgaatttatcacatgcatggatgactcgtgcatcatgggnccacgt |
647 |
Q |
| |
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||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | | |||| |
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| T |
45643468 |
aaaaattatcaatgaaattgattctactatccgccagaaggcttctcgattgcgcgaatttatcacatgcatggatgactcgtgtatcatgtgccaacgt |
45643567 |
T |
|
| Q |
648 |
acaagaactgatgaagggatagttag |
673 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
45643568 |
acaagaactgatgaagggatagttag |
45643593 |
T |
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