View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1248Ase15 (Length: 916)

Name: NF1248Ase15
Description: NF1248-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1248Ase15
NF1248Ase15
[»] chr4 (2 HSPs)
chr4 (127-410)||(2656362-2656644)
chr4 (508-659)||(11052865-11053015)
[»] chr1 (1 HSPs)
chr1 (508-659)||(50234455-50234605)
[»] chr7 (2 HSPs)
chr7 (508-657)||(1448339-1448487)
chr7 (601-659)||(34361538-34361596)
[»] chr3 (6 HSPs)
chr3 (508-659)||(46954089-46954239)
chr3 (513-659)||(26701591-26701736)
chr3 (593-656)||(39464279-39464342)
chr3 (598-656)||(21789272-21789330)
chr3 (394-432)||(50718729-50718767)
chr3 (394-432)||(50794081-50794119)
[»] chr5 (1 HSPs)
chr5 (593-656)||(31468855-31468918)


Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 127 - 410
Target Start/End: Original strand, 2656362 - 2656644
Alignment:
Q  127 cactaggtacatgaacgaaggtaccatttcaaactggtctcaggttcacatatagttgcaagaacaaatccttgacatacctgcataataatgatcatcg 226  Q
    |||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2656362 cactgggtacatgaacgaaagtaccattccaaactggtctcaggttcacatatagttgcaagaacaaatccttgacatacctgcataataatgatcatca 2656461  T
Q  227 attagtaatgattatttggtccacttgttcaactgtctattttaaattgaaacttattaacatataagagacataaataaaccacctcagatgattcaat 326  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2656462 attagtaatgatcatttggtccacttgttcaactgtctattttaaattgaaacttattaacatataagagacataaataaaccacctcagatgattcaat 2656561  T
Q  327 caaattttcaatcgtcatcctttttgtctttagcaaatccttagacaacgacacagtcttatgcgtggacatctggctcacacc 410  Q
    |||||||||||||||||||||||| |||||||| ||||||| |||||| |||||||||||||| ||||||||||||||||||||    
T  2656562 caaattttcaatcgtcatccttttcgtctttaggaaatcctcagacaatgacacagtcttatg-gtggacatctggctcacacc 2656644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 508 - 659
Target Start/End: Complemental strand, 11053015 - 11052865
Alignment:
Q  508 cctaagctctaggaaaataagttcctactgcatcattccttaataaaacaggaaggtcttgaggagggggatgggtggatgaagtactcctcattagaag 607  Q
    |||| |||||||||||  |||||||||  ||||||||||| | |||| | ||||||||||||||||| | ||| |||||| ||| || | || |||||||    
T  11053015 cctaggctctaggaaagcaagttcctatagcatcattcctaagtaaatcgggaaggtcttgaggaggag-atgagtggattaagcacacatcgttagaag 11052917  T
Q  608 aagctcccaattttgccatgaaatcagcgcattggtttccttcacggaggca 659  Q
    ||||||| |||||||||||||||||||||||||| |||||||| | ||||||    
T  11052916 aagctcctaattttgccatgaaatcagcgcattgttttccttctctgaggca 11052865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 4e-68; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 508 - 659
Target Start/End: Original strand, 50234455 - 50234605
Alignment:
Q  508 cctaagctctaggaaaataagttcctactgcatcattccttaataaaacaggaaggtcttgaggagggggatgggtggatgaagtactcctcattagaag 607  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||    
T  50234455 cctaagctctacgaaaataagttcctactgcatcattccttaataaaacaggaaggtcttgaggagggg-atgggtggatgaggtactactcattagaag 50234553  T
Q  608 aagctcccaattttgccatgaaatcagcgcattggtttccttcacggaggca 659  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50234554 aagctcccaattttgccatgaaatcagcgcattggtttccttcacggaggca 50234605  T

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Target: chr7 (Bit Score: 114; Significance: 2e-57; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 508 - 657
Target Start/End: Complemental strand, 1448487 - 1448339
Alignment:
Q  508 cctaagctctaggaaaataagttcctactgcatcattccttaataaaacaggaaggtcttgaggagggggatgggtggatgaagtactcctcattagaag 607  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||| |||||||| |    
T  1448487 cctaagctctaggaaaataagttcatactgcatcattccttagtaaaacaggaaggtcttgaggagggg-atgggtggatgaggtactcatcattagacg 1448389  T
Q  608 aagctcccaattttgccatgaaatcagcgcattggtttccttcacggagg 657  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  1448388 aagctcccaattttgccatgaaatcaacgcattggtttccttcacagagg 1448339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 601 - 659
Target Start/End: Complemental strand, 34361596 - 34361538
Alignment:
Q  601 ttagaagaagctcccaattttgccatgaaatcagcgcattggtttccttcacggaggca 659  Q
    ||||| |||||||| |||||||||||||||||||| |||||||||||||| | ||||||    
T  34361596 ttagaggaagctccgaattttgccatgaaatcagcacattggtttccttccctgaggca 34361538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 6e-49; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 508 - 659
Target Start/End: Original strand, 46954089 - 46954239
Alignment:
Q  508 cctaagctctaggaaaataagttcctactgcatcattccttaataaaacaggaaggtcttgaggagggggatgggtggatgaagtactcctcattagaag 607  Q
    |||||||||||||||||||| |||||||| |||||||||||| |||| ||||||||||||||||||||| ||| |||||| | |||||| ||||| || |    
T  46954089 cctaagctctaggaaaataaattcctactccatcattccttagtaaatcaggaaggtcttgaggagggg-atgagtggataaggtactcatcatttgacg 46954187  T
Q  608 aagctcccaattttgccatgaaatcagcgcattggtttccttcacggaggca 659  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46954188 aagctcctaattttgccatgaaatcagcgcattggtttccttcacggaggca 46954239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 513 - 659
Target Start/End: Original strand, 26701591 - 26701736
Alignment:
Q  513 gctctaggaaaataagttcctactgcatcattccttaataaaacaggaaggtcttgaggagggggatgggtggatgaagtactcctcattagaagaagct 612  Q
    |||||||||||  |||||||||  ||||||||||| | ||||||  |||||||||||||||| | |||| ||||| ||| || | || ||||| ||||||    
T  26701591 gctctaggaaagcaagttcctatagcatcattcctaagtaaaacgtgaaggtcttgaggaggag-atggatggattaagcacacatcgttagaggaagct 26701689  T
Q  613 cccaattttgccatgaaatcagcgcattggtttccttcacggaggca 659  Q
     | |||||||||||||||||||| |||||||||||||| | ||||||    
T  26701690 tcgaattttgccatgaaatcagcacattggtttccttctctgaggca 26701736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 656
Target Start/End: Complemental strand, 39464342 - 39464279
Alignment:
Q  593 actcctcattagaagaagctcccaattttgccatgaaatcagcgcattggtttccttcacggag 656  Q
    |||| ||||| || ||||||||||| || |||| | |||| |||||||||||||||||||||||    
T  39464342 actcttcatttgatgaagctcccaacttagccaagtaatccgcgcattggtttccttcacggag 39464279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 598 - 656
Target Start/End: Complemental strand, 21789330 - 21789272
Alignment:
Q  598 tcattagaagaagctcccaattttgccatgaaatcagcgcattggtttccttcacggag 656  Q
    ||||| || ||||||||||| || |||| | |||| |||||||||||||||||||||||    
T  21789330 tcatttgatgaagctcccaacttggccaagtaatccgcgcattggtttccttcacggag 21789272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 394 - 432
Target Start/End: Complemental strand, 50718767 - 50718729
Alignment:
Q  394 gacatctggctcacaccttggctcatatctatatcagca 432  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  50718767 gacatctggctcacaccctgactcatatctatatcagca 50718729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 394 - 432
Target Start/End: Original strand, 50794081 - 50794119
Alignment:
Q  394 gacatctggctcacaccttggctcatatctatatcagca 432  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  50794081 gacatctggctcacaccctgactcatatctatatcagca 50794119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 656
Target Start/End: Complemental strand, 31468918 - 31468855
Alignment:
Q  593 actcctcattagaagaagctcccaattttgccatgaaatcagcgcattggtttccttcacggag 656  Q
    |||| ||||| || ||||||||||||||||||| | |||| || ||||| ||||||||||||||    
T  31468918 actcttcattcgatgaagctcccaattttgccaagtaatccgcacattgatttccttcacggag 31468855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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