View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1248Ase18 (Length: 444)
Name: NF1248Ase18
Description: NF1248-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248Ase18 |
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Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 8 - 438
Target Start/End: Original strand, 1532815 - 1533246
Alignment:
| Q |
8 |
atttgacggcaacaccgtcgcgatcgaagtacataaatggtatttgagggcagttcttctcattatcaagaatcgcgatgcgactattgttgtgattttt |
107 |
Q |
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| T |
1532815 |
atttgacggcaacaccgtcgcgatcgaagtacataaatggtatttgagggcagttcttctcattatcaagaatcgcgatgcgactgttgttgtgactttt |
1532914 |
T |
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| Q |
108 |
gtt--gtttcaaagaatcaagaggtgaaactcgcgtacattgagtgcagagaagtggggtattgtaggtttgattcgtgtgagcaaatctaaga--cttg |
203 |
Q |
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| T |
1532915 |
gttttgtttcaaagaatcaagcggtgaaactcgcatacattgagtgcagagaagtggggtattgtaggtttgatctgtgtaagcaaatctaaggttcttg |
1533014 |
T |
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| Q |
204 |
caacttttttatcatatgagttgtacttacggacctataacagtgatttttaaatgcgttaattatatgtattgagaagagttttttacatttttgagat |
303 |
Q |
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| T |
1533015 |
caacttttttatcatatgagttgtacttatggacctatgactgtgatttttaaatgctttaattatatgtattgagaagagttttttacatttttgagat |
1533114 |
T |
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| Q |
304 |
cacgggtgttacaagttactactattactatatgattcagttgaaacatgggctcatgattcatgactcggttgagacatcttttttgtttcacattgaa |
403 |
Q |
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| T |
1533115 |
cacgggtgttacaagt---tactattactatatgattcagttgaaacatggcctcatgattcatgactcagttgagacatcttttttgtttcacattgaa |
1533211 |
T |
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| Q |
404 |
ttcagagtgcaggccatcacgggttacacttatta |
438 |
Q |
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| T |
1533212 |
ttcagagtgcagtctatcacgggttacacttatta |
1533246 |
T |
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