View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1248Ase22 (Length: 205)
Name: NF1248Ase22
Description: NF1248-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248Ase22 |
 | |
|
| [»] scaffold0134 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 203
Target Start/End: Original strand, 9603220 - 9603416
Alignment:
| Q |
7 |
taatactaccaaaaccaaaaatacgaaatttaaaacggtttgcatcatatgaatttgggaaatctattttaactttgttctcaaacctttcaccagaaat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9603220 |
taatactaccaaaaccaaaaatacgaaatttaaaacggtttgcatcatatgaatttgggaaatctattttaactttgttctcaaacctttcaccagaaat |
9603319 |
T |
|
| Q |
107 |
agaatagaaaacgtcttgaccaagtttgaaatcccttaggaggagagatgtcccgtcgtaataaggacatcgatgagaattaaacaagagattgttg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9603320 |
agaatagaaaacgtcttgaccaagtttgaaatcccttaggaggagagatgtcccgtcgtaataaggacatcgatgagaattaaataagagattgttg |
9603416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 7 - 203
Target Start/End: Original strand, 9594417 - 9594613
Alignment:
| Q |
7 |
taatactaccaaaaccaaaaatacgaaattta---aaacggtttgcatcatatgaatttgggaaatctattttaactttgttctcaaacctttcaccaga |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||| |||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
9594417 |
taatactaccaaaaccaaaaatacgaaattttttgaaacggtttgcat---atggatttgagaaatctaatttaacattgttctcaaacctttcaccaga |
9594513 |
T |
|
| Q |
104 |
aatagaatagaaaacgtcttgaccaagtttgaaatcccttaggaggagagatgtcccgtcgtaataaggacatcgatgagaattaaacaagagattgttg |
203 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||| |||| || |||||| ||||||||||||||||||||| ||||||||| | |||||||||||| |
|
|
| T |
9594514 |
aatagaatagaaaacgtctttaccaagttcgaaatcctttagaagcagagatcccccgtcgtaataaggacatcggtgagaattagataagagattgttg |
9594613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 7 - 188
Target Start/End: Original strand, 9582624 - 9582802
Alignment:
| Q |
7 |
taatactaccaaaaccaaaaatacgaaatttaaaacggtttgcatcatatgaatttgggaaatctattttaactttgttctcaaacctttcaccagaaat |
106 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||| ||||| ||| ||||| |||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
9582624 |
taatactaccaaagccaaaaatacgaaatttgaaacggtctgcat---atgcatttgagaaatctaattgaactttgttctcaaacctttcaccagaaat |
9582720 |
T |
|
| Q |
107 |
agaatagaaaacgtcttgaccaagtttgaaatcccttaggaggagagatgtcccgtcgtaataaggacatcgatgagaatta |
188 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||| |||||| ||| ||||||||||||||| | ||||||||| |
|
|
| T |
9582721 |
agaatagaaaacgtctttaccaagttcgaaatcccttaggagcagagatcccccatcgtaataaggacattggtgagaatta |
9582802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 7 - 188
Target Start/End: Original strand, 9588319 - 9588497
Alignment:
| Q |
7 |
taatactaccaaaaccaaaaatacgaaatttaaaacggtttgcatcatatgaatttgggaaatctattttaactttgttctcaaacctttcaccagaaat |
106 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||| ||||| ||| ||||| |||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
9588319 |
taatactaccaaagccaaaaatacgaaatttgaaacggtctgcat---atgcatttgagaaatctaattgaactttgttctcaaacctttcaccagaaat |
9588415 |
T |
|
| Q |
107 |
agaatagaaaacgtcttgaccaagtttgaaatcccttaggaggagagatgtcccgtcgtaataaggacatcgatgagaatta |
188 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||| |||||| ||| ||||||||||||||| | ||||||||| |
|
|
| T |
9588416 |
agaatagaaaacgtctttaccaagttcgaaatcccttaggagcagagatcccccatcgtaataaggacattggtgagaatta |
9588497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 188
Target Start/End: Complemental strand, 9568622 - 9568444
Alignment:
| Q |
7 |
taatactaccaaaaccaaaaatacgaaatttaaaacggtttgcatcatatgaatttgggaaatctattttaactttgttctcaaacctttcaccagaaat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||| ||| ||||| |||||||| || |||||||||||||||||||||||| |||| |
|
|
| T |
9568622 |
taatactaccaaaaccaaaaatacgaaaattgaaacggtttgcaa---atggatttgtgaaatctaattgtactttgttctcaaacctttcaccataaat |
9568526 |
T |
|
| Q |
107 |
agaatagaaaacgtcttgaccaagtttgaaatcccttaggaggagagatgtcccgtcgtaataaggacatcgatgagaatta |
188 |
Q |
| |
|
|||||||||||| |||| |||||||| |||||| |||| || ||||||| || |||||||||||| ||| ||||||||| |
|
|
| T |
9568525 |
agaatagaaaacttctttaccaagttctaaatcctttagaagaagagatgctccatcgtaataaggatatctgtgagaatta |
9568444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 178
Target Start/End: Complemental strand, 9573755 - 9573586
Alignment:
| Q |
7 |
taatactaccaaaaccaaaaatacgaaatttaaaacggtttgcatcatatgaatttgggaaatctattttaactttgttctcaaacctttcaccagaaat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||| || ||||| |||||||| || | |||| ||||||||||||||||| |||| |
|
|
| T |
9573755 |
taatactaccaaaaccaaaaatacgaaacttgaaacggtttgcatg---tggatttgagaaatctaactttaatttgatctcaaacctttcaccataaat |
9573659 |
T |
|
| Q |
107 |
agaatagaaaacgtcttgaccaagtttgaaatcccttaggaggagagatgtcccgtcgtaa-taaggacatcg |
178 |
Q |
| |
|
||||||||||||||||| |||||||| |||||| ||||||| | ||||| ||| |||||| ||||||||||| |
|
|
| T |
9573658 |
agaatagaaaacgtctttaccaagttcaaaatcctttaggagcaaagatgccccatcgtaattaaggacatcg |
9573586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 195
Target Start/End: Original strand, 54295783 - 54295919
Alignment:
| Q |
59 |
atttgggaaatctattttaactttgttctcaaacctttcaccagaaatagaatagaaaacgtcttgaccaagtttgaaatcccttaggaggagagatgtc |
158 |
Q |
| |
|
|||||||||||||| ||||||||| || | ||||||||||||| |||| ||||||||| ||| || ||| | || ||||||||||| || | ||| | |
|
|
| T |
54295783 |
atttgggaaatctaatttaactttattttgaaacctttcaccaaaaatggaatagaaatcgtttttaccgaattcaaaatcccttagaagtaaagaagat |
54295882 |
T |
|
| Q |
159 |
ccgtcgtaataaggacatcgatgagaattaaacaaga |
195 |
Q |
| |
|
|||| |||||||| | | || ||||||||||| |||| |
|
|
| T |
54295883 |
ccgttgtaataagaaaagcggtgagaattaaataaga |
54295919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 16957 - 17017
Alignment:
| Q |
52 |
catatgaatttgggaaatctattttaactttgttctcaaacctttcaccagaaatagaata |
112 |
Q |
| |
|
|||||| ||||| |||||||| ||| || || ||||||||||| |||||||||| |||||| |
|
|
| T |
16957 |
catatggatttgagaaatctaatttgaccttattctcaaacctctcaccagaaagagaata |
17017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University