View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1248Ase24 (Length: 255)
Name: NF1248Ase24
Description: NF1248-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248Ase24 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 2074027 - 2074270
Alignment:
| Q |
8 |
cttctatcaatcgtatccgtgctacagaaataaacaaaagctatggttatccaaattcaaaaccaaaaatcccctttttcttcttgttcatttcaatttg |
107 |
Q |
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| T |
2074027 |
cttctatcaatcgtatccgtgctacagaaataaacaaaagctatggttatccaaattcaaaaccaaaaatcccctttttcttcttgttcatttcaatttg |
2074126 |
T |
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| Q |
108 |
gtgaattcatcctaactagtatagtgaagaacattaaaacaaattgaagccaacacaaaatgcagaaattttcaaattctattgcgatacttat--nnnn |
205 |
Q |
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| T |
2074127 |
gtgaattcatcctaactagtatagtgaagaacattaaaacaaattgaagccaacacaaaatgcagaaattttcaaattctattgcaatacttatgaaaaa |
2074226 |
T |
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| Q |
206 |
nnnntggatttttcagtaatgagtgatttcagagaaacccatta |
249 |
Q |
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| T |
2074227 |
agaatggatttttcagtaatgagtgatttcagagaaacccatta |
2074270 |
T |
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