View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1248Ase28 (Length: 433)
Name: NF1248Ase28
Description: NF1248-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248Ase28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 7 - 425
Target Start/End: Original strand, 31162693 - 31163123
Alignment:
| Q |
7 |
taattacatcactttcacacacacaagttgcaagtccaaacagcgacttctcaacatactttggagtaaaactaaaaatgaatcaatgcacgtggaattg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31162693 |
taattacatcactttcacacacacaagttgcaagtccaaacagcgacttctcaacatattttggagtaaaactaaaa-tgaatcaatgcacgtggaattg |
31162791 |
T |
|
| Q |
107 |
atgtcttttttgtggttgattggtgtaggttggtgcatatatccatctatatttgttacattatgcttctagtaaggtacacatgaagacggatcaactg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
31162792 |
atgtcttttttgtggttgattggtgtaggttggtgcatatatccatctatatttgttacattatgcttctagtaaggtacacataaagatagatcaactg |
31162891 |
T |
|
| Q |
207 |
aagaacaagcagggtgatgatgcattcattagagggaacaatggtactagtgattgaaatcaaatattcttgattctttatagatattttattgcagaaa |
306 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31162892 |
aagaacaagcagggttatgatgcattcattagagggaacaatggtactagtgattgaaatcaaatattcttgattctttatagatattttattgcagaaa |
31162991 |
T |
|
| Q |
307 |
tgaccgaaaagttatttttctttgatgcaattctaaacatgagtacttcagagaagaccctagcaaaaggggatt-------------tccaaatatatg |
393 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
31162992 |
tgactgaaaagttatttttgtttgatgcaattctaaacatgagtacttcagagaggaccctagcaaaaggggattataaatacaggaatccaaatatatg |
31163091 |
T |
|
| Q |
394 |
ttggtttgaaagacacttgcaagttgtaatat |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
31163092 |
ttggtttgaaagacacttgcaagttgtaatat |
31163123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 224 - 378
Target Start/End: Original strand, 31145596 - 31145753
Alignment:
| Q |
224 |
tgatgcattcattagagggaacaatggtacta---gtgattgaaatcaaatattcttgattctttatagatattttattgcagaaatgaccgaaaagtta |
320 |
Q |
| |
|
||||||||||||| ||||||| |||||||||| ||| ||||||| |||| | ||||||||| ||| ||||||| ||||||||||| | ||| | || |
|
|
| T |
31145596 |
tgatgcattcattcgagggaataatggtactattagtgcttgaaataaaatttgcttgattctgtattgatatttcattgcagaaataattgaatatttc |
31145695 |
T |
|
| Q |
321 |
tttttctttgatgcaattctaaacatgagtacttcagagaagaccctagcaaaagggg |
378 |
Q |
| |
|
|||||||||||||| |||| |||| ||||| ||| ||| ||| |||||| |||||| |
|
|
| T |
31145696 |
gttttctttgatgcagttctgtacataagtacgtcaaagaggactctagcagaagggg |
31145753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 31144629 - 31144678
Alignment:
| Q |
125 |
attggtgtaggttggtgcatatatccatctatatttgttacattatgctt |
174 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
31144629 |
attggtgtaggttggtgcatatgtccatctatttttgttacattatgctt |
31144678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 31145409 - 31145461
Alignment:
| Q |
125 |
attggtgtaggttggtgcatatatccatctatatttgttacattatgcttcta |
177 |
Q |
| |
|
|||||||||| ||||||||||| || |||| |||||||| ||||||||||||| |
|
|
| T |
31145409 |
attggtgtagattggtgcatatgtcgatctttatttgtttcattatgcttcta |
31145461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University