View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1248Ase3 (Length: 414)
Name: NF1248Ase3
Description: NF1248-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248Ase3 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 9 - 408
Target Start/End: Original strand, 34243365 - 34243764
Alignment:
| Q |
9 |
gtggtatcatcagtggaatcagaattagaaaccaaagtgatcnnnnnnnnnnnnntatcagtagctataacagcagaagcaacatcttctttattcaaag |
108 |
Q |
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| T |
34243365 |
gtggtatcatcagtggaatcagaattagaaaccaaagtgatcaaaaaatcaaaaatatcagtagctataacagcagaagcaacatcttctttattcaaag |
34243464 |
T |
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| Q |
109 |
ttcttcttttagcatcaatagccataatccaagaccttcttgtaagttcttcaatgaaaagttcacaagcttttgagaaaacaattggagcaacccctga |
208 |
Q |
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| T |
34243465 |
ttcttcttttagcatcaatagccataatccaagaccttcttgtaagttcttcaatgaaaagttcacaagcttttgagaaaacaattggagctacacctga |
34243564 |
T |
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| Q |
209 |
tatcattttcacgtcttcactagaattcttcattatcttctttattcttgctaatggtaatgagtgtggacctgttcttcctatgccaccatttagtata |
308 |
Q |
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| T |
34243565 |
tatcattttcacgtcttcactagaattcttcattatcttctttattcttgctaatggtaatgaatgtggacctgttcttcctatgccaccatttagtata |
34243664 |
T |
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| Q |
309 |
cctgaatatgcacctgcttgtctcatattgtttctttatttttctctgtttttgagttggattatgagtcttaatttcagtgttatatataaacaaatta |
408 |
Q |
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| T |
34243665 |
cctgaatatgcacctgcttgtctcatattgtttctttatttttctctgtttttgagttggattatgagtcttaatttcagtgttatatataaacaaatta |
34243764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 24 - 408
Target Start/End: Original strand, 34259912 - 34260296
Alignment:
| Q |
24 |
gaatcagaattagaaaccaaagtgatcnnnnnnnnnnnnntatcagtagctataacagcagaagcaacatcttctttattcaaagttcttcttttagcat |
123 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34259912 |
gaatcagaattagaaaccaaagtgatcaaaaaatcaaaaatatcagtagctataacagcagaagcaacatcttctttattcaaagttcttcttttagcat |
34260011 |
T |
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| Q |
124 |
caatagccataatccaagaccttcttgtaagttcttcaatgaaaagttcacaagcttttgagaaaacaattggagcaacccctgatatcattttcacgtc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34260012 |
caatagccataatccaagaccttcttgtaagttcttcaatgaaaagttcacaagcttttgagaaaacaattggagcaacccctgatatcattttcacgtc |
34260111 |
T |
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| Q |
224 |
ttcactagaattcttcattatcttctttattcttgctaatggtaatgagtgtggacctgttcttcctatgccaccatttagtatacctgaatatgcacct |
323 |
Q |
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| T |
34260112 |
ttcactagaattcttcattatcttctttattcttgctaatggtaatgaatgtggacctgttcttcctatgccaccatttactatacctgaatatgcacct |
34260211 |
T |
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| Q |
324 |
gcttgtctcatattgtttctttatttttctctgtttttgagttggattatgagtcttaatttcagtgttatatataaacaaatta |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||| |
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| T |
34260212 |
gcttgtctcatattgtttctttatttttctctgtttttgagttggattatgagtgttaatttcagtgttatataaatacaaatta |
34260296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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