View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1248Ase30 (Length: 352)

Name: NF1248Ase30
Description: NF1248-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1248Ase30
NF1248Ase30
[»] chr1 (5 HSPs)
chr1 (33-328)||(41613798-41614085)
chr1 (44-118)||(12502737-12502811)
chr1 (38-110)||(37186828-37186900)
chr1 (33-118)||(35068911-35068996)
chr1 (39-71)||(3628742-3628774)
[»] chr7 (7 HSPs)
chr7 (38-118)||(35289883-35289961)
chr7 (33-118)||(8059882-8059967)
chr7 (38-118)||(21422013-21422091)
chr7 (38-118)||(6328185-6328265)
chr7 (38-118)||(45329400-45329480)
chr7 (38-118)||(46021442-46021522)
chr7 (38-118)||(22702432-22702511)
[»] chr8 (7 HSPs)
chr8 (33-112)||(32778541-32778620)
chr8 (33-118)||(31291256-31291341)
chr8 (39-118)||(44769349-44769427)
chr8 (44-118)||(36442343-36442416)
chr8 (33-107)||(44122646-44122720)
chr8 (38-110)||(39709635-39709707)
chr8 (39-71)||(40216864-40216896)
[»] scaffold0160 (1 HSPs)
scaffold0160 (33-110)||(22127-22204)
[»] chr3 (4 HSPs)
chr3 (33-118)||(54923523-54923608)
chr3 (33-118)||(27845121-27845206)
chr3 (38-114)||(21129087-21129163)
chr3 (33-73)||(39948607-39948647)
[»] chr4 (4 HSPs)
chr4 (43-118)||(51578984-51579059)
chr4 (38-71)||(37759513-37759546)
chr4 (38-102)||(24478464-24478528)
chr4 (38-118)||(46343366-46343446)
[»] scaffold0027 (1 HSPs)
scaffold0027 (49-118)||(19337-19404)
[»] scaffold0223 (1 HSPs)
scaffold0223 (33-118)||(22957-23042)
[»] chr2 (5 HSPs)
chr2 (33-118)||(18741404-18741489)
chr2 (33-110)||(22382339-22382416)
chr2 (33-110)||(22914365-22914442)
chr2 (33-110)||(22999120-22999197)
chr2 (38-110)||(18677853-18677925)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 33 - 328
Target Start/End: Original strand, 41613798 - 41614085
Alignment:
Q  33 gacgggatgacaaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccgacctaacatagagtgttatatt 132  Q
    ||||||||||||||||||||||||||| || || ||||| ||||| ||||  |||||||||||| ||||||||||| | ||||||||| | |||||||||    
T  41613798 gacgggatgacaaagccatcataaacttacgcacacaaagtttagatatcgaagttcaaaccccgatcatgacgtctggcctaacatacattgttatatt 41613897  T
Q  133 tacggtaaacttgaattttattgtatgaaaaatggaatgaacaggtgtgagggaaaatttaaaaggaacatgtacctatggtcgtcgtaaacttaacaaa 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41613898 tacggtaaacttgaattttattgtatgaaaaatggaatgaacaggtgtgagggaaaatttaaaaggaacatgtacctatggtcgtcgtaaacttaacaaa 41613997  T
Q  233 cnttatcataaaggaacatgtncctttggtcgttatgtacttatgtacttcacaaagttataatggtatacaaaagatcaattacnatgtctctct 328  Q
    | ||||||||||||||||||| ||||||||||        ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41613998 cattatcataaaggaacatgtacctttggtcg--------ttatgtacttcacaaagttataatggtatacaaaagatcaattacaatgtctctct 41614085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 12502811 - 12502737
Alignment:
Q  44 aaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccgacctaaca 118  Q
    |||||||||||||||||||||| ||||| || ||||| | |||||| |||||||||||||||||||| |||||||    
T  12502811 aaagccatcataaactcacacacacaaagttgaggtaccggagttcgaaccccaatcatgacgtccggcctaaca 12502737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 37186828 - 37186900
Alignment:
Q  38 gatgacaaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccg 110  Q
    |||||||||||||||||||||||| ||| ||||| |  ||||| |||||||| |||||   ||||||||||||    
T  37186828 gatgacaaagccatcataaactcaaacacacaaagtggaggtaccagagttcgaaccctggtcatgacgtccg 37186900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 35068996 - 35068911
Alignment:
Q  33 gacgggatgacaaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccgacctaaca 118  Q
    |||| |||| ||||||| ||||||||||||||| ||||| |  ||||||  || ||| |||| | ||||||||||||| |||||||    
T  35068996 gacgagatggcaaagccgtcataaactcacacacacaaagtggaggtattggaattcgaacctcgatcatgacgtccggcctaaca 35068911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 3628774 - 3628742
Alignment:
Q  39 atgacaaagccatcataaactcacacaaacaaa 71  Q
    ||||||||||||||||||||||||||| |||||    
T  3628774 atgacaaagccatcataaactcacacacacaaa 3628742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 35289961 - 35289883
Alignment:
Q  38 gatgacaaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccgacctaaca 118  Q
    |||| |||||||||||||||||||||||  ||||||  ||||| |||||||| |||||||||||||||||| |||||||||    
T  35289961 gatggcaaagccatcataaactcacaca--caaaatggaggtaccagagttcgaaccccaatcatgacgtctgacctaaca 35289883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 8059967 - 8059882
Alignment:
Q  33 gacgggatgacaaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccgacctaaca 118  Q
    |||| |||||||||| ||| | ||||||||||| ||||| || ||||| | | |||| |||||| ||||||||| |||||||||||    
T  8059967 gacgagatgacaaagtcatgacaaactcacacatacaaagttgaggtaccggggttcgaaccccgatcatgacgcccgacctaaca 8059882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 21422091 - 21422013
Alignment:
Q  38 gatgacaaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccgacctaaca 118  Q
    ||||||||||| |||||||||||||||| |  || |  ||||||||| ||||||||| || ||||||||||||| ||||||    
T  21422091 gatgacaaagctatcataaactcacacata--aagtggaggtatcagggttcaaacctcagtcatgacgtccgatctaaca 21422013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 6328185 - 6328265
Alignment:
Q  38 gatgacaaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccgacctaaca 118  Q
    ||||||||| |||||||||||||||||| | ||| |  ||||||| | |||| ||||| | ||||||||||| ||||||||    
T  6328185 gatgacaaaaccatcataaactcacacacataaagtggaggtatcggggttcgaaccctagtcatgacgtccaacctaaca 6328265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 45329480 - 45329400
Alignment:
Q  38 gatgacaaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccgacctaaca 118  Q
    |||||||||| ||||||||||||||||| | ||||| |||||||| | |||| || ||| ||||| | ||||| |||||||    
T  45329480 gatgacaaagacatcataaactcacacacataaaatgtaggtatccgggttcgaatcccgatcataatgtccggcctaaca 45329400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 46021442 - 46021522
Alignment:
Q  38 gatgacaaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccgacctaaca 118  Q
    |||| ||||||||||||||||||||||| |||||||  ||||| | | |||| ||||||  ||||||| |||| |||||||    
T  46021442 gatggcaaagccatcataaactcacacacacaaaatggaggtaccggggttcgaaccccggtcatgacatccggcctaaca 46021522  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 22702511 - 22702432
Alignment:
Q  38 gatgacaaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccgacctaaca 118  Q
    |||||||||||||||||||| |||| || ||||| |  ||||||||| |||| | |||| ||||| ||||||||| |||||    
T  22702511 gatgacaaagccatcataaattcacgcacacaaagtggaggtatcagggttcgagccccgatcat-acgtccgacttaaca 22702432  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 32778620 - 32778541
Alignment:
Q  33 gacgggatgacaaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccgac 112  Q
    |||| ||||||||||||||||||||| |||||| ||||| |  ||||||| ||||||||||||| |||||||||| ||||    
T  32778620 gacgagatgacaaagccatcataaacccacacacacaaagtggaggtatcggagttcaaaccccgatcatgacgtacgac 32778541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 31291341 - 31291256
Alignment:
Q  33 gacgggatgacaaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccgacctaaca 118  Q
    |||| ||||||||| |||||||||||||||| | |||||||  ||||| || ||||| |||||| |||||||||| || |||||||    
T  31291341 gacgagatgacaaaaccatcataaactcacaaacacaaaatgaaggtaccaaagttcgaaccccgatcatgacgttcggcctaaca 31291256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 39 - 118
Target Start/End: Complemental strand, 44769427 - 44769349
Alignment:
Q  39 atgacaaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccgacctaaca 118  Q
    |||| |||||||||||||||||||||||||||  |  ||||| | ||||||||||||  |||| |||||||| |||||||    
T  44769427 atgataaagccatcataaactcacacaaacaaggtagaggta-cggagttcaaaccctgatcaagacgtccggcctaaca 44769349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 36442416 - 36442343
Alignment:
Q  44 aaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccgacctaaca 118  Q
    |||||||| ||||||||||||| ||||  |  ||||| | |||||| ||||||||||||||| ||||||||||||    
T  36442416 aaagccattataaactcacacacacaag-tggaggtaccggagttcgaaccccaatcatgacatccgacctaaca 36442343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 44122646 - 44122720
Alignment:
Q  33 gacgggatgacaaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgt 107  Q
    |||| |||| |||||||| |||||||| ||||| | ||| |  |||||||||||||| ||||| |||||||||||    
T  44122646 gacgagatgtcaaagccagcataaacttacacacataaagtggaggtatcagagttcgaaccctaatcatgacgt 44122720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 39709635 - 39709707
Alignment:
Q  38 gatgacaaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccg 110  Q
    |||| |||| |||||||||||||||||| | ||| |  |||||||||||||  ||||||| ||| ||||||||    
T  39709635 gatggcaaaaccatcataaactcacacatataaagtggaggtatcagagtttgaaccccagtcacgacgtccg 39709707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 40216896 - 40216864
Alignment:
Q  39 atgacaaagccatcataaactcacacaaacaaa 71  Q
    ||||||||||||||||||||||||||| |||||    
T  40216896 atgacaaagccatcataaactcacacacacaaa 40216864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 22204 - 22127
Alignment:
Q  33 gacgggatgacaaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccg 110  Q
    |||| |||||||||| ||||||||||||||||| ||||| |  ||||||| | |||| |||||| |||||||||||||    
T  22204 gacgagatgacaaagtcatcataaactcacacacacaaagtggaggtatcggggttcgaaccccgatcatgacgtccg 22127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 54923608 - 54923523
Alignment:
Q  33 gacgggatgacaaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccgacctaaca 118  Q
    |||| |||||||||  ||||||||| ||||||| |||||||  | ||||| |||||| ||||||  ||||||||||||||||||||    
T  54923608 gacgagatgacaaaatcatcataaattcacacacacaaaatggaagtatcggagttcgaaccccggtcatgacgtccgacctaaca 54923523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 27845121 - 27845206
Alignment:
Q  33 gacgggatgacaaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccgacctaaca 118  Q
    |||| ||||| ||| |||| ||||||||||||| | ||| || ||||||  || ||| |||||||||||||||||||| |||||||    
T  27845121 gacgagatgataaaaccattataaactcacacacataaagttgaggtattggaattcgaaccccaatcatgacgtccggcctaaca 27845206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 21129163 - 21129087
Alignment:
Q  38 gatgacaaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccgacct 114  Q
    |||| ||||||||||||||||||||| | ||||| |  ||||| | | |||| |||||| |||||||||||||||||    
T  21129163 gatggcaaagccatcataaactcacaaacacaaagtagaggtaccggggttcgaaccccgatcatgacgtccgacct 21129087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 39948647 - 39948607
Alignment:
Q  33 gacgggatgacaaagccatcataaactcacacaaacaaaat 73  Q
    |||| |||||||||| ||||||||||||||||| |||||||    
T  39948647 gacgagatgacaaagtcatcataaactcacacatacaaaat 39948607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 51578984 - 51579059
Alignment:
Q  43 caaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccgacctaaca 118  Q
    ||||||||||||||||||||| | | ||| |  ||||||| |||||||||| |||||||| |||||||| ||||||    
T  51578984 caaagccatcataaactcacatagataaagtggaggtatcggagttcaaactccaatcataacgtccgatctaaca 51579059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 37759546 - 37759513
Alignment:
Q  38 gatgacaaagccatcataaactcacacaaacaaa 71  Q
    |||||||||||||||||||||||||||| |||||    
T  37759546 gatgacaaagccatcataaactcacacacacaaa 37759513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 24478464 - 24478528
Alignment:
Q  38 gatgacaaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcat 102  Q
    ||||||||| ||||||||||| |||||| | ||| |  |||||||||||||| |||||| |||||    
T  24478464 gatgacaaaaccatcataaacccacacatataaagtggaggtatcagagttcgaaccccgatcat 24478528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 46343446 - 46343366
Alignment:
Q  38 gatgacaaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccgacctaaca 118  Q
    |||||||||| |||||||||||||||||   |||||  |||||  || |||| ||||||  |||||||||||| |||||||    
T  46343446 gatgacaaagtcatcataaactcacacacgtaaaatggaggtactagggttcgaaccccggtcatgacgtccggcctaaca 46343366  T

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Target: scaffold0027 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 19337 - 19404
Alignment:
Q  49 catcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccgacctaaca 118  Q
    ||||||||||| |||||  ||||||  ||||||| | |||| |||||||||||||||||||| |||||||    
T  19337 catcataaacttacaca--caaaatggaggtatcggggttcgaaccccaatcatgacgtccggcctaaca 19404  T

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Target: scaffold0223 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 23042 - 22957
Alignment:
Q  33 gacgggatgacaaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccgacctaaca 118  Q
    |||||||||||||| |||||||||||||| ||| ||||| |  ||||| | | |||| | || || |||||||||||| |||||||    
T  23042 gacgggatgacaaaaccatcataaactcaaacacacaaagtggaggtaccggggttcgatcctcagtcatgacgtccggcctaaca 22957  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 18741404 - 18741489
Alignment:
Q  33 gacgggatgacaaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccgacctaaca 118  Q
    |||| |||||||||| ||||||||||||||||| ||||| |  ||||| | |||||  |||| | ||||||| || ||||||||||    
T  18741404 gacgagatgacaaagtcatcataaactcacacacacaaagtggaggtaccggagtttgaacctcgatcatgatgttcgacctaaca 18741489  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 22382339 - 22382416
Alignment:
Q  33 gacgggatgacaaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccg 110  Q
    |||| ||||||||| |||||||||||||||| | ||||| |  |||| || | |||| |||||| |||||||||||||    
T  22382339 gacgagatgacaaaaccatcataaactcacatacacaaagtggaggtgtcggggttcgaaccccgatcatgacgtccg 22382416  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 22914365 - 22914442
Alignment:
Q  33 gacgggatgacaaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccg 110  Q
    |||| ||||||||| |||||||||||||||| | ||||| |  |||| || | |||| |||||| |||||||||||||    
T  22914365 gacgagatgacaaaaccatcataaactcacatacacaaagtggaggtgtcggggttcgaaccccgatcatgacgtccg 22914442  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 22999197 - 22999120
Alignment:
Q  33 gacgggatgacaaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccg 110  Q
    |||| ||||||||| |||||||||||||||||| ||||| |  |||| || | |||| ||||||  ||||||||||||    
T  22999197 gacgagatgacaaaaccatcataaactcacacacacaaagtggaggtgtcggggttcgaaccccggtcatgacgtccg 22999120  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 18677925 - 18677853
Alignment:
Q  38 gatgacaaagccatcataaactcacacaaacaaaatttaggtatcagagttcaaaccccaatcatgacgtccg 110  Q
    |||||||||| ||| |||||| |||||| | |||||  |||||||||||||| ||||  ||| ||||||||||    
T  18677925 gatgacaaagtcattataaacccacacacagaaaatggaggtatcagagttcgaaccttaattatgacgtccg 18677853  T

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