View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1248Ase4 (Length: 484)
Name: NF1248Ase4
Description: NF1248-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248Ase4 |
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Alignment Details
Target: chr6 (Bit Score: 419; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 13 - 478
Target Start/End: Original strand, 2362722 - 2363188
Alignment:
| Q |
13 |
aaagctctaacacaacacagataggagtccaaatctaaccctaaacgaaaaacttatttattctttcatacctagatgtcttataaataaataaaaagaa |
112 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2362722 |
aaagctctaacacaactcagatgggagtccaaatctaaccctaaacgtaaaacttatttattctttcatacctagatgtcttataaataaataaaaagaa |
2362821 |
T |
|
| Q |
113 |
cattctaatatttaaccctaatagatctcttatatattatttaatcataatgtgtcttttgaaattcgtacttcttttacagacactaatcgggggagga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2362822 |
cattctaatatttaaccctaatagatctcttatatattatttaatcataatgtgtcttttgaaattcgtacttcttttacagacactaatcgggggagga |
2362921 |
T |
|
| Q |
213 |
attgaaacaactagcgttacccttacatgggcaatatgtttgttacttagaaatcctctaatattg-aaaaagcaaaagaagaacttgatgctcaagttg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2362922 |
attgaaacaactagcgttacccttacatgggcaatatgtttgttgcttagaaatcctctaatattgaaaaaagcaaaagaagaacttgatgctcaagttg |
2363021 |
T |
|
| Q |
312 |
gaaaagagaggtgtgtaagaaagtcagatatagacaagttggtgtaccttcaagccatagtcaaagaaacactaagattatatccacctgaccctttatc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
2363022 |
gaaaagagaggtgtgtaagaaagtcagatatagacaagttggtgtaccttcaagccatagtcaaagaaacactaagattatatccacctggccctttatc |
2363121 |
T |
|
| Q |
412 |
tgtgcctcgtgaattatcagagaattgcagtttaggtgaatatgatgtaaaaaatggaacacgatta |
478 |
Q |
| |
|
||||||||||||||| ||||||||||| | |||||||| ||||||||||| |||||||||||||||| |
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|
| T |
2363122 |
tgtgcctcgtgaattctcagagaattgtaatttaggtggatatgatgtaagaaatggaacacgatta |
2363188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 199 - 474
Target Start/End: Original strand, 2368654 - 2368930
Alignment:
| Q |
199 |
taatcgggggaggaattgaaacaactagcgttacccttacatgggcaatatgtttgttacttagaaatcctctaatattg-aaaaagcaaaagaagaact |
297 |
Q |
| |
|
|||||| ||||||| |||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
2368654 |
taatcgcgggaggagttgacacaaccagtgttacccttacatgggcaatatgtttgttacttagaaatcctctaatattggaaaaagcaaaagaagaact |
2368753 |
T |
|
| Q |
298 |
tgatgctcaagttggaaaagagaggtgtgtaagaaagtcagatatagacaagttggtgtaccttcaagccatagtcaaagaaacactaagattatatcca |
397 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| || |||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| |
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|
| T |
2368754 |
tgatactcaagttggaaaagagaggtgtgtaagagagacagacatagacaagttggtgtatcttcaagccattgtcaaagaaaccctaagattatatcca |
2368853 |
T |
|
| Q |
398 |
cctgaccctttatctgtgcctcgtgaattatcagagaattgcagtttaggtgaatatgatgtaaaaaatggaacacg |
474 |
Q |
| |
|
||| ||||||||| | ||||||||||| ||||||||||||| ||||| || ||||||||||| ||| |||||||| |
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|
| T |
2368854 |
gctggccctttatcggcacctcgtgaattctcagagaattgcaatttagatggatatgatgtaagaaaaggaacacg |
2368930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 182 - 397
Target Start/End: Original strand, 2357576 - 2357792
Alignment:
| Q |
182 |
acttcttttacagacactaatcgggggaggaattgaaacaactagcgttacccttacatgggcaatatgtttgttacttagaaatcctctaatattg-aa |
280 |
Q |
| |
|
||||| ||||||| ||||||| | ||||||||||| |||| | |||||||||| |||||||||||||||||||| | |||||||| | |||| || |
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|
| T |
2357576 |
acttcatttacagtcactaattgcaggaggaattgacacaagtgctattacccttacttgggcaatatgtttgttactgaaaaatcctcatacattggaa |
2357675 |
T |
|
| Q |
281 |
aaagcaaaagaagaacttgatgctcaagttggaaaagagaggtgtgtaagaaagtcagatatagacaagttggtgtaccttcaagccatagtcaaagaaa |
380 |
Q |
| |
|
|||||||||| ||||||||| || ||||||| ||| | ||||||| |||||| |||||| |||||||||||||||||||||| ||| ||||||||| |
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|
| T |
2357676 |
aaagcaaaagcagaacttgacttccacgttggaagagataaatgtgtaacaaagtcggatataaacaagttggtgtaccttcaagcgataatcaaagaaa |
2357775 |
T |
|
| Q |
381 |
cactaagattatatcca |
397 |
Q |
| |
|
| ||||||||||||||| |
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|
| T |
2357776 |
ccctaagattatatcca |
2357792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 207 - 399
Target Start/End: Original strand, 2307151 - 2307344
Alignment:
| Q |
207 |
ggaggaattgaaacaactagcgttacccttacatgggcaatatgtttgttacttagaaatcctctaat-attgaaaaagcaaaagaagaacttgatgctc |
305 |
Q |
| |
|
||||||| ||| ||||| || || ||||||||||||||| |||||||| || | | |||||||| | || |||||||||||||||||||| || |||| |
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|
| T |
2307151 |
ggaggaagtgacacaaccagtgtcacccttacatgggcactatgtttgctattgaacaatcctcttgtaatggaaaaagcaaaagaagaactcgacgctc |
2307250 |
T |
|
| Q |
306 |
aagttggaaaagagaggtgtgtaagaaagtcagatatagacaagttggtgtaccttcaagccatagtcaaagaaacactaagattatatccacc |
399 |
Q |
| |
|
|| |||| |||||||| |||||| | ||||||||||| | || ||| ||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
2307251 |
aaattggcaaagagagatgtgtatgtgagtcagatataaataaattgacataccttcaagctatagtcaaagaaacactacgattatatccacc |
2307344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 207 - 399
Target Start/End: Original strand, 2339832 - 2340025
Alignment:
| Q |
207 |
ggaggaattgaaacaactagcgttacccttacatgggcaatatgtttgttacttagaaatcctctaatattgaaaaag-caaaagaagaacttgatgctc |
305 |
Q |
| |
|
||||||| ||| |||| ||| || ||||||||||||||| |||||||| | | | |||||||| || || ||||| ||||||||||||||||||||| |
|
|
| T |
2339832 |
ggaggaagtgacacaagtagtgtcacccttacatgggcactatgtttgcttttgaataatcctcttgtaatggaaaaggcaaaagaagaacttgatgctc |
2339931 |
T |
|
| Q |
306 |
aagttggaaaagagaggtgtgtaagaaagtcagatatagacaagttggtgtaccttcaagccatagtcaaagaaacactaagattatatccacc |
399 |
Q |
| |
|
||||||| |||||||| ||| |||| ||| |||||| | || ||| | ||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
2339932 |
aagttggcaaagagagatgtttaagcgagtttgatataaataaattgatataccttcaagctatagtcaaagaaacactaagattgtatccacc |
2340025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 207 - 440
Target Start/End: Original strand, 2351285 - 2351519
Alignment:
| Q |
207 |
ggaggaattgaaacaactagcgttacccttacatgggcaatatgtttgttacttagaaatcctctaatattg-aaaaagcaaaagaagaacttgatgctc |
305 |
Q |
| |
|
||||||| ||| |||| ||| ||||| |||||||||||||||||||| || | | ||||||||| ||||| |||||||||||||||||||||| ||| |
|
|
| T |
2351285 |
ggaggaagtgacacaagtagtgttactcttacatgggcaatatgtttactattgaaaaatcctcttgtattgaaaaaagcaaaagaagaacttgacactc |
2351384 |
T |
|
| Q |
306 |
aagttggaaaagagaggtgtgtaagaaagtcagatatagacaagttggtgtaccttcaagccatagtcaaagaaacactaagattatatccacctgaccc |
405 |
Q |
| |
|
| ||||| ||||| ||| ||||| |||| ||||| | |||||||| ||||||||||| ||||| |||||||| |||||||| ||||||| | || |
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|
| T |
2351385 |
acgttggcaaagaaaggcttgtaaacgagtcggatattggtaagttggtataccttcaagctatagtaaaagaaaccctaagattgcatccaccaggtcc |
2351484 |
T |
|
| Q |
406 |
tttatctgtgcctcgtgaattatcagagaattgca |
440 |
Q |
| |
|
| | | | ||||||||||| ||||||||||||| |
|
|
| T |
2351485 |
tctcgccgcacctcgtgaattctcagagaattgca |
2351519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 396
Target Start/End: Complemental strand, 2261550 - 2261501
Alignment:
| Q |
347 |
aagttggtgtaccttcaagccatagtcaaagaaacactaagattatatcc |
396 |
Q |
| |
|
|||||||| || |||||||| |||||||||||||| |||||||| ||||| |
|
|
| T |
2261550 |
aagttggtatatcttcaagcaatagtcaaagaaaccctaagattgtatcc |
2261501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 134
Target Start/End: Complemental strand, 17304991 - 17304958
Alignment:
| Q |
101 |
aaataaaaagaacattctaatatttaaccctaat |
134 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
17304991 |
aaataaagagaacattctaatatttaaccctaat |
17304958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 333 - 397
Target Start/End: Complemental strand, 14711623 - 14711559
Alignment:
| Q |
333 |
agtcagatatagacaagttggtgtaccttcaagccatagtcaaagaaacactaagattatatcca |
397 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| | ||||||||||| |||||| | |||||| |
|
|
| T |
14711623 |
agtcagatattaacaagttggtataccttcaagcagttgtcaaagaaacgctaagactttatcca |
14711559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 172 - 399
Target Start/End: Original strand, 4305579 - 4305807
Alignment:
| Q |
172 |
tgaaattcgtacttcttttacagacactaatcgggggaggaattgaaacaactagcgttacccttacatgggcaatatgtttgttacttagaaatcctct |
271 |
Q |
| |
|
||||||| | ||||| |||| ||||||| || | |||||| |||| |||||||| || ||||||| ||||||||| ||||||||||| ||||||||| |
|
|
| T |
4305579 |
tgaaatttgaacttcgtttaaagacactgattgcaggaggagttgacacaactagtgtcacccttatatgggcaatgtgtttgttactggaaaatcctct |
4305678 |
T |
|
| Q |
272 |
aatatt-gaaaaagcaaaagaagaacttgatgctcaagttggaaaagagaggtgtgtaagaaagtcagatatagacaagttggtgtaccttcaagccata |
370 |
Q |
| |
|
|| | ||||||||| ||||||||||||| |||||||| |||||||||||||||| | |||| ||||||||||||||||| ||||||||||| ||| |
|
|
| T |
4305679 |
tgtaatagaaaaagcacaagaagaacttgacatccaagttggcaaagagaggtgtgtaaaagagtcggatatagacaagttggtataccttcaagcgata |
4305778 |
T |
|
| Q |
371 |
gtcaaagaaacactaagattatatccacc |
399 |
Q |
| |
|
||||||||||| ||||| |||| |||||| |
|
|
| T |
4305779 |
gtcaaagaaaccctaaggttatgtccacc |
4305807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 278 - 478
Target Start/End: Complemental strand, 5804580 - 5804380
Alignment:
| Q |
278 |
gaaaaagcaaaagaagaacttgatgctcaagttggaaaagagaggtgtgtaagaaagtcagatatagacaagttggtgtaccttcaagccatagtcaaag |
377 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| | |||||| | ||| | ||||||||||| |||||||| ||||||||||| |||||||| | |
|
|
| T |
5804580 |
gaaaaagcaaaagaagaacttgacactcatgttggtagagagagatttgtgaatgagtcagatataattaagttggtataccttcaagctatagtcaagg |
5804481 |
T |
|
| Q |
378 |
aaacactaagattatatccacctgaccctttatctgtgcctcgtgaattatcagagaattgcagtttaggtgaatatgatgtaaaaaatggaacacgatt |
477 |
Q |
| |
|
||||||| ||||| |||||| ||| ||| || | ||||||||||| ||||||||||||| |||||||| ||| |||| | ||| ||||| ||||| |
|
|
| T |
5804480 |
aaacactgagattgtatccatctgctcctctaggcggacctcgtgaattctcagagaattgcactttaggtggttatcatgttacaaaaggaactcgatt |
5804381 |
T |
|
| Q |
478 |
a |
478 |
Q |
| |
|
| |
|
|
| T |
5804380 |
a |
5804380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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