View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1248Ase6 (Length: 620)
Name: NF1248Ase6
Description: NF1248-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248Ase6 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 91 - 614
Target Start/End: Complemental strand, 8355267 - 8354703
Alignment:
| Q |
91 |
tatcatgaacagaggaacaaagttgataatatttaggatatcaaattacccaacaggaacgtagagggattcagacaatcttaattgttcgtcttgattc |
190 |
Q |
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| T |
8355267 |
tatcatgaacagaggaacaaagttgatattatttaggatatcaaattacccaacaggaacatagagggattcagacaatcttaattgttcgtcttgattc |
8355168 |
T |
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| Q |
191 |
taaatttaagttttaatttactttcaatttgtaaaccaacttggaatgcaaacccctgaaatttatatttgtatgacttataaaacatataaaatcatcc |
290 |
Q |
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| T |
8355167 |
taaatttaagttttaatttactttcaatttgtaaaccaacttggaatgcaaacccctgaaatttatatttatatgacttataaaacatataaaatcatcc |
8355068 |
T |
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| Q |
291 |
tttttgag------------------tactataagagagggaccaaaaccgatagtttttaaaatgaatgaccaagtactccattattaaaggagcaatc |
372 |
Q |
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| T |
8355067 |
tttttgagtttaaaaaaaaataaaaatactataagaaagggaccaaaaccgatagtttttaaaatgaatgaccaagtactccattattaaaggaccaatc |
8354968 |
T |
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| Q |
373 |
cgagta--attca-----aggataggatagataagtaatcttattaaaatagatagactagggtgtatttttgaactgagtctcttacaacaacaaaaac |
465 |
Q |
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| T |
8354967 |
cgagtaatattcaaggataggataggatagataagtaatcttattaaaatagatagactagggtgtatttttgaactgag--tcttacaacaacaaaaac |
8354870 |
T |
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| Q |
466 |
aaaacagttatccatg------------atatatctatcattcccaaagcaaaaggtt-----ttaggttgcaggggaagcattagcaatgtcnatgaca |
548 |
Q |
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| T |
8354869 |
aaaacagttatccatgatatatatatatatatatatatcattcccaaagcaaagggttttaggttaggttgcaggggaagcattagcaatgtcaatgaca |
8354770 |
T |
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| Q |
549 |
aaacggtaacgaacatcattcttc-acagacgctgaaaagcttcattgattgtatcagctttgatta |
614 |
Q |
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| T |
8354769 |
aaacggtaacgaacatcattcttcaaaagacgctgaaaagcttcattgattgtatcagctttgatta |
8354703 |
T |
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