View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1248Ase7 (Length: 338)
Name: NF1248Ase7
Description: NF1248-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248Ase7 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 7 - 332
Target Start/End: Complemental strand, 29661713 - 29661388
Alignment:
| Q |
7 |
taatacagtactatttatgataccgtagcaaggttacatagattttttccatgccactattaagtgcattgtaaatatgctactttatctcccatggaaa |
106 |
Q |
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| T |
29661713 |
taatacagtactatttatgataccgtagcaaggttacatagattttttccatgccactattaagtgcattgtaaatatgctactttatctcccatggaaa |
29661614 |
T |
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| Q |
107 |
aacagaaaacatgaaaagaaaatattcttggaatccatcacaccctataatacttttttcaaccttgaaccactctacttccctagtcatatgtatttgc |
206 |
Q |
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| T |
29661613 |
aacagaaaacatgaaaagaaaatattcttggaatccatcacaccctataatacttttttcaaccttgaaccactctacttccctagtcatatgtatttgc |
29661514 |
T |
|
| Q |
207 |
ataccttgaaacaaacacgttgtaagagatcgcctacaatatattctgaaagatacaatcttaatattgagatatttttcatatatcctaacagccatta |
306 |
Q |
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| T |
29661513 |
ataccttgaaacaaacacgttgtaagagatcgcctacaatatattctgaaagatacaatcttaatattgagatatttttcatatatcctaacagccatta |
29661414 |
T |
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| Q |
307 |
ttagacctattccaatagatataatt |
332 |
Q |
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| T |
29661413 |
ttagacctattccaatagatataatt |
29661388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 33184445 - 33184754
Alignment:
| Q |
18 |
tatttatgataccgtagcaaggttacatagattttttccatgccactattaagtgc-attgtaaatatgctactttatctcccatggaaaaacagaaaac |
116 |
Q |
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| T |
33184445 |
tattcatgctaccgtaggaaggctgcatagatattttccatgccactactacatgttattctaaatatg-tactttatcttccattgaaaaagagaaaac |
33184543 |
T |
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| Q |
117 |
atgaa-aagaaaatattcttggaatccatcacaccctataatacttttttcaaccttgaaccactct-acttccctagtcatatgtatttgcataccttg |
214 |
Q |
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| T |
33184544 |
accaagaaaaaaatattcttgcaatccattatacccc-taatacttttttaaacct-----caatcttactttcctagtaatatatatttgcatacctca |
33184637 |
T |
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| Q |
215 |
aaacaaacacgttgtaagagatcgcctacaata--------tattctgaaagatacaatcttaatattg---agatatttttcatatatcctaacagcca |
303 |
Q |
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| T |
33184638 |
aaacaaacacactataagagatcacctacaatactgtaacatattctgaaagatacagtcttaatattattaagatatttctcatgtatcctaacagcta |
33184737 |
T |
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| Q |
304 |
ttattagacctattcca |
320 |
Q |
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| T |
33184738 |
gtattagacctattcca |
33184754 |
T |
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