View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1248Eco1 (Length: 318)
Name: NF1248Eco1
Description: NF1248-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248Eco1 |
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| [»] scaffold0163 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 305
Target Start/End: Complemental strand, 32018678 - 32018375
Alignment:
| Q |
9 |
ctagcttagagcttaggttgtttcttttttagagcaatcagcgcatgcattattattatagtaggttttgttccattcgttatagccgaaatttatctca |
108 |
Q |
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| T |
32018678 |
ctagcttagagcttaggttgtttctttgttagagcaatcagcgcatgcattattattatagtaggttttgttccattcgttatagccgaaatttatctca |
32018579 |
T |
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| Q |
109 |
ttatgcttctgaaatatcacacaaaaatttgatgttt-------aaaatataatagtttgctcaattcgtttatgtgtttcattattcgttgagtttatt |
201 |
Q |
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| T |
32018578 |
ttatgcttctgaaataccacacaaaaatttgatattttatttctaaaatataatagtttgctcaattcgtttatgtgtttcattattcgttgagtttatt |
32018479 |
T |
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| Q |
202 |
tggattgtttagttatagatagtttacttgaggaaagtcatctattatatgcatgtgaagtgctatgtagcacaccttcattgatcaatgtaatgggaat |
301 |
Q |
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| T |
32018478 |
tggattgtttagttatagatagtttacttgaagaaagtcatctattatatacatgtgaagtgctatgtgacacaccttcatcgaccaatgtaatgggagt |
32018379 |
T |
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| Q |
302 |
tgcc |
305 |
Q |
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| T |
32018378 |
tgcc |
32018375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 39917849 - 39917934
Alignment:
| Q |
145 |
taaaatataatagtttgctcaattcgtttatgtgtttcattattcgttgagtttatttggattgtttagttatagatagtttacttg |
231 |
Q |
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| T |
39917849 |
taaaatataatatttttcacaattcattcatgtgtttgattattgtgtgagttgatt-ggattgtttagttatagatggtttacttg |
39917934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 39823774 - 39823811
Alignment:
| Q |
81 |
ccattcgttatagccgaaatttatctcattatgcttct |
118 |
Q |
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| T |
39823774 |
ccatttgttatagccgaagtttatctcattatgcttct |
39823811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 5581359 - 5581315
Alignment:
| Q |
248 |
atatgcatgtgaagtgctatgtagcacaccttcattgatcaatgt |
292 |
Q |
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| T |
5581359 |
atatgcatgtgaagtgctatttggcacaccttcattggtcaatgt |
5581315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 18056104 - 18056060
Alignment:
| Q |
248 |
atatgcatgtgaagtgctatgtagcacaccttcattgatcaatgt |
292 |
Q |
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| T |
18056104 |
atatgcatgtgaagtgctatgtgacacaccttcattggtcaatgt |
18056060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0163 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0163
Description:
Target: scaffold0163; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 28069 - 28033
Alignment:
| Q |
248 |
atatgcatgtgaagtgctatgtagcacaccttcattg |
284 |
Q |
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| T |
28069 |
atatgcatgtgaagtgctatgtgacacaccttcattg |
28033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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