View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1248Eco10 (Length: 430)
Name: NF1248Eco10
Description: NF1248-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248Eco10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 10 - 426
Target Start/End: Original strand, 1395489 - 1395904
Alignment:
| Q |
10 |
gcaggtgaataccattaccacacatacaacaacaactcaagatgtgaatagctcaaaatcattcgcatattatgtagttaagggaggaggccaaaactat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1395489 |
gcaggtgaataccattaccacacatacaacaacaactcaagatgtgaatagctcaaaatcattcgcatattatgtagttaagggaggaggccaaaactat |
1395588 |
T |
|
| Q |
110 |
aacaatgaaaatttagtgttgtgttattcttcacaagttgaagatgtatagtgggcatgccaagggttgatagcagaggtgcatgatttttgtgttatcc |
209 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1395589 |
aacaatgaaaatttagtgttgcgttattcttcacaagttgaagatgtatagtgggcatgccaagggttgatagcagaggtgcatgatttttgtgttatcc |
1395688 |
T |
|
| Q |
210 |
caacgctggagcaacgtcttcttgacggcagattttcgtctttacaaattgcaccgatggggggaaacatgtgttcatgtattaataatgaagcaaaata |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1395689 |
caacgctggagcaacgtcttcttgacggcagactttcgtctttacgaattgcaccgat-gggggaaacatgtgttcatgtattaataatgaagcaaaata |
1395787 |
T |
|
| Q |
310 |
attcttcagttattttttcgttgcgtttgaagattagcatccacaatttgttaaattaaataggtacttatggctccgggtttcaggcgtccctttgcat |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1395788 |
attcttcagttattttttcgttgcgtttgaagattagcatccacaatttgttaaattaaataggtacttatggctccgggtttcaggcgtccctttgcat |
1395887 |
T |
|
| Q |
410 |
gcttggacttctgaatt |
426 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
1395888 |
gcttggacttctgaatt |
1395904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University