View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1248Eco11 (Length: 530)
Name: NF1248Eco11
Description: NF1248-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248Eco11 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-101; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 29477522 - 29477745
Alignment:
| Q |
9 |
ggacttcattagattccaactccaaatgcggcaacacttctcccaatcgagaatccaatccaactgggtaatcggcaacgtgtaagcgagcatgatccaa |
108 |
Q |
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| T |
29477522 |
ggacttcatgagattccaactccaaatgccggaaaacttctcccaatcgagaatccaatccaactgggtaatcggcaacgtgtaagggagcacgatccaa |
29477621 |
T |
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| Q |
109 |
cttcctggagatctctttcacaatcttctggagaaactgatattcatactcaaccctaaaccaggaggttagttcaaactaaatgcagttatttccacac |
208 |
Q |
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| T |
29477622 |
cctcctggagatctctttcacaatcttctggagaaactgatgttcatactcaaccctaaaccaggaggttagttcaaactaaatgcagttatttccacac |
29477721 |
T |
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| Q |
209 |
ctacatacttattcttatcttatt |
232 |
Q |
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||| |||||||||||||||||||| |
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| T |
29477722 |
ctatatacttattcttatcttatt |
29477745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 408 - 523
Target Start/End: Original strand, 29479658 - 29479773
Alignment:
| Q |
408 |
atcaacaccaaacataatactccctaatnnnnnnnnttacggagtctggttcnctctcttaaaaacgatggaagagttctctctttctctctaatttctt |
507 |
Q |
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| T |
29479658 |
atcaacaccaaacataatactccctaataaaaaaaattacggaatctggttcactctcttaaaaacgatggaagagttctctctttctctctaatttctt |
29479757 |
T |
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| Q |
508 |
ccaaaaagcactctca |
523 |
Q |
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| T |
29479758 |
ccaaaaagcactctca |
29479773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 232 - 293
Target Start/End: Original strand, 29479331 - 29479392
Alignment:
| Q |
232 |
tggcatacaatacaattcaagaagaaaggaaacattctcttcaaatgaaaacaataatagta |
293 |
Q |
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| T |
29479331 |
tggcatacaatacaattcaagaagaaaggaaacattctcttcaaatgaaaacaatagtagta |
29479392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 29515198 - 29515256
Alignment:
| Q |
237 |
tacaatacaattcaagaagaaaggaaacattctcttcaaatgaaaacaataatagtaat |
295 |
Q |
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||||||||||||||||||||||| | |||||| |||||||| |||||||||||||||| |
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| T |
29515198 |
tacaatacaattcaagaagaaagatagcattctgttcaaatgtaaacaataatagtaat |
29515256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 29527528 - 29527584
Alignment:
| Q |
237 |
tacaatacaattcaagaagaaaggaaacattctcttcaaatgaaaacaataatagta |
293 |
Q |
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| T |
29527528 |
tacaatacaattcaagcagaaagcaagcattctgttcaaatgtcaacaataatagta |
29527584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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