View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1248Eco19 (Length: 793)
Name: NF1248Eco19
Description: NF1248-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248Eco19 |
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Alignment Details
Target: chr8 (Bit Score: 605; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 9 - 674
Target Start/End: Original strand, 14332155 - 14332823
Alignment:
| Q |
9 |
tattagcac-tgcttcagctgcaatgttgtataagaaaaaacataaggtaaatttatgtagaaaatgcaccacttcacttacaattcattttttctgttt |
107 |
Q |
| |
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||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14332155 |
tattagcacatgcttgagctgcaatgttgtataagaaaaaatataaggtaaatttatgtagaaaatgcaccacttcacttacaattcattttttctgttt |
14332254 |
T |
|
| Q |
108 |
tcattttaaatcataatcaagaagggtaacatatagtatgttcaagaagcaatctttctaaagtacaggtcatgcaacatggtat-attgggcttaatct |
206 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
14332255 |
tcattttaaaccataatcaagaagggtaacatatagtatgttcaagaagcaatctttctaaagtacaggtcatgcaacatggcattattgggcttaatct |
14332354 |
T |
|
| Q |
207 |
tcttacttttggttttgttccactgacaaatactagtgaagatataattgcaactcaaatggcccaagacttcatgatggggtggtaagtaatgatttga |
306 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14332355 |
tcttacttttggttttgttccactgacaaatactagtaaagatatagttgcaactcaaatggcccaagacttcatgatggggtggtaagtaatgatttga |
14332454 |
T |
|
| Q |
307 |
tcatgttatctttcttttcgatgtttgtagacattgctaacctttgaaattatcggattgcataggactaacctttgcattatctttctttgcatatggt |
406 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14332455 |
tcatgttatctttcttttcaatgtttgtagacattgctaacctttgaaattatgggattgcataggactaacctttgcattatctttctttgcatatggt |
14332554 |
T |
|
| Q |
407 |
ttttatatctctaacaagtgcctacaaataaggttcctttgagcttaaactaagacaacactcacatcattttactttgtaacatataaaattatagaaa |
506 |
Q |
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| T |
14332555 |
ttttatatctctaacaagtgcctacaaataaggttcctttgagcttaaactaagacaacattcacatcattttactttgtaacatataaaattatagaaa |
14332654 |
T |
|
| Q |
507 |
acatgttgctttgtcacaactttcaattatacattaattgctacgagtatacgttgtttatattgcagggttctaaatccattaacatttggtgattatc |
606 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14332655 |
acatgttgctttgtcacaactttcaattatacattaattgctacgagtatacgttgtttatattgcagggttctaaatccattaacatttggtgattatc |
14332754 |
T |
|
| Q |
607 |
cttatataatgaaaaagaatgttggatcaaggcttccttccttcacatcaaaggaatc-aatctgatca |
674 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
14332755 |
cttatataatgaaaaagaatgttggatcaaggcttccttccttcacagcaaaggaatcaaatctgatca |
14332823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 547; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 9 - 666
Target Start/End: Original strand, 9989122 - 9989793
Alignment:
| Q |
9 |
tattagcac-tgcttcagctgcaatgttgtataagaaaaaacataaggtaaatttatgtagaaaatgcaccacttcacttacaattcattttttctgttt |
107 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9989122 |
tattagcacatgcttcagctgcaacgttgtataagaaaaaatataaggtaaatttatgtagaaaatgcaccacttcacttacaattcattttttctgttt |
9989221 |
T |
|
| Q |
108 |
tcattttaaatcataatcaagaagggtaacatatagtatgttcaagaagcaatctttctaaagtacaggtcatgcaacatggtat-attgggcttaatct |
206 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||| |
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| T |
9989222 |
tcattttaaaccataatcaagaagggtaacatatagtatgttcaagaagcaatctttctaaagtacaggtcatgcaacatggcattattgagcttaatct |
9989321 |
T |
|
| Q |
207 |
tcttacttttggttttgttccactgacaaatactagtgaaga------------tataattgcaactcaaatggcccaagacttcatgatggggtggtaa |
294 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9989322 |
tcttacttttggttttgttccactgacaaatactagtaaagatataagtaaagatataattgcaactcaaatggcccaagacttcatgatggggtggtaa |
9989421 |
T |
|
| Q |
295 |
gtaatgatttgatcatgttatctttcttttcgatgtttgtagacattgctaacctttgaaattatcggattgcataggactaacctttgcattatctttc |
394 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
9989422 |
gtaatgatttaatcatgttatctttcttttcaatgtttgtagacattgctaacctttgaaattatgggattgcataggactaacctttgcattatctttc |
9989521 |
T |
|
| Q |
395 |
tttgcatatggtttttatatctctaacaagtgcctacaaataaggttcctttgagcttaaactaagacaacactcacatcattttactttgtaacatata |
494 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9989522 |
tttgcatatggttttcatatctctaacaagtgcctacaaataaggttcctttgagcttaaactaagacaacactcacatcattttactttgtaacatata |
9989621 |
T |
|
| Q |
495 |
aaattatagaaaacatgttgctttgtcacaactttcaattatacattaattgctacgagtatacgttgtttatattgcagggttctaaatccattaacat |
594 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||| |
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|
| T |
9989622 |
aaattataaaaaacatgttgctttgtcacaactttcaattatacattaattgctacgggtatacattgtttatattgcagggttctaaatccataaacat |
9989721 |
T |
|
| Q |
595 |
ttggtgattatccttatataatgaaaaagaatgttggatcaaggcttccttccttcacatcaaaggaatcaa |
666 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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|
| T |
9989722 |
ttggtgattttccttatataatgaaaaagaatgttggatcaaggcttccttccttcacagcgaaggaatcaa |
9989793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 144 - 378
Target Start/End: Complemental strand, 25327872 - 25327638
Alignment:
| Q |
144 |
tatgttcaagaagcaatctttctaaagtacaggtcatgcaacatgg-tatattgggcttaatcttcttacttttggttttgttccactgacaaatactag |
242 |
Q |
| |
|
|||||||| |||| |||||||||||||| |||| |||||||||||| | ||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
25327872 |
tatgttcatgaagaaatctttctaaagtgcagggcatgcaacatggatttattgggtttaatcttcttacttttggttttgttccactaacaaatactag |
25327773 |
T |
|
| Q |
243 |
tgaagatataattgcaactcaaatggcccaagacttcatgatggggtggtaagtaatgatttgatcatgttatctttcttttcgatgtttgtagacattg |
342 |
Q |
| |
|
|||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| ||||||| |
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|
| T |
25327772 |
tgaagatatagttgccactcaaagggcccaagacttcatgatggggtggtaagtaatgatttgatcctgttatcttccttttcaatgtttgcagacattt |
25327673 |
T |
|
| Q |
343 |
ctaacctttgaaattatcggattgcataggactaac |
378 |
Q |
| |
|
|||| ||||| ||||| |||||||||||||||||| |
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|
| T |
25327672 |
ctaaactttg-cattatgggattgcataggactaac |
25327638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 178 - 299
Target Start/End: Complemental strand, 25322005 - 25321883
Alignment:
| Q |
178 |
catgcaacatgg-tatattgggcttaatcttcttacttttggttttgttccactgacaaatactagtgaagatataattgcaactcaaatggcccaagac |
276 |
Q |
| |
|
|||||||||||| | ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| |
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|
| T |
25322005 |
catgcaacatggatttattgggtttaatcttcttacttttggatttgttccactgacaaatactagtgaagatataattgccactcaaagggtccaagac |
25321906 |
T |
|
| Q |
277 |
ttcatgatggggtggtaagtaat |
299 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
25321905 |
ttcatgatggggtggtaagtaat |
25321883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 567 - 674
Target Start/End: Complemental strand, 25327432 - 25327324
Alignment:
| Q |
567 |
tattgcagggttctaaatccattaacatttggtgattatccttatataatgaaaaagaatgttggatcaaggcttccttccttcacatcaaaggaatc-a |
665 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | |
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|
| T |
25327432 |
tattgcagggttctaaatccattaacatttggtgattatcctgatataatgaaaaagaatgctggatcaaggcttccttccttcacaataaaggaatcaa |
25327333 |
T |
|
| Q |
666 |
atctgatca |
674 |
Q |
| |
|
||||||||| |
|
|
| T |
25327332 |
atctgatca |
25327324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 566 - 666
Target Start/End: Complemental strand, 25321818 - 25321718
Alignment:
| Q |
566 |
atattgcagggttctaaatccattaacatttggtgattatccttatataatgaaaaagaatgttggatcaaggcttccttccttcacatcaaaggaatca |
665 |
Q |
| |
|
|||||| ||| | ||||| ||||| | ||||||||| |||||| ||||||||| |||||||| ||||||||| |||||||| |||||| |||||||||| |
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|
| T |
25321818 |
atattgtaggttcctaaacccatttatatttggtgaatatcctgatataatgagaaagaatgctggatcaagacttccttctttcacaaaaaaggaatca |
25321719 |
T |
|
| Q |
666 |
a |
666 |
Q |
| |
|
| |
|
|
| T |
25321718 |
a |
25321718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 454 - 514
Target Start/End: Complemental strand, 25327606 - 25327544
Alignment:
| Q |
454 |
aactaagacaacactca---catcattttactttgtaacatataaaattatagaaaacatgttg |
514 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||| |
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|
| T |
25327606 |
aactaagacaacactcaaatcatcattttactt-gtaacagataaaattatagaaaacatgttg |
25327544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 25327996 - 25327921
Alignment:
| Q |
18 |
tgcttcagctgcaatgttgtataagaaaaaacataaggta-aatttatgtagaaaatgcaccacttcacttacaat |
92 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||| |||||||| || |||||||||| ||||||||||| ||||||||| |
|
|
| T |
25327996 |
tgcttcagctgcaagattgtataggaagaaatataaggtagaagttatgtagaacatgcaccactttacttacaat |
25327921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 592 - 674
Target Start/End: Original strand, 21725790 - 21725873
Alignment:
| Q |
592 |
catttggtgattatccttatataatgaaaaagaatgttggatcaaggcttccttccttcacatcaaaggaatc-aatctgatca |
674 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
21725790 |
catttggtgattatccttatataatgaaaaagaatgttggatcaaggcttccttccttcacagcaaaggaatcaaatctgatca |
21725873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 592 - 674
Target Start/End: Original strand, 21805515 - 21805598
Alignment:
| Q |
592 |
catttggtgattatccttatataatgaaaaagaatgttggatcaaggcttccttccttcacatcaaaggaatc-aatctgatca |
674 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
21805515 |
catttggtgattatccttatataatgaaaaagaatgttggatcaaggcttccttccttcacagcaaaggaatcaaatctgatca |
21805598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 5218556 - 5218491
Alignment:
| Q |
192 |
tattgggcttaatcttcttacttttggttttgttccactgacaaatactagtgaagatataattgc |
257 |
Q |
| |
|
||||||| ||||||| ||| |||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
5218556 |
tattgggtttaatctccttgtttttggttttgttccactaacaaatactagtgaagacataattgc |
5218491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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