View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1248Eco2 (Length: 356)
Name: NF1248Eco2
Description: NF1248-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248Eco2 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 9 - 350
Target Start/End: Original strand, 34304924 - 34305265
Alignment:
| Q |
9 |
ttgatggctaatgctgaaaatggagaagaaagaaaattagggtttgatctctttggtgaactgaaaaattcatcgtgcattagtcttgtgagttgcagga |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34304924 |
ttgatggctaatgctgaaaatggagaagaaagaaaattagggtttgatctctttggtgaactgaaaaattcatcgtgcattagtcttgtgagttgcagga |
34305023 |
T |
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| Q |
109 |
agagagtgaagtcatttattaaaagcatgtggttgagaaattcggtggtggctcaaaatcaagaattgtctttgtgttgttctagcacatgtcagagcgg |
208 |
Q |
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| T |
34305024 |
agagagtgcagtcatttattaaaagcatgtggttgagaaattcggtggtggttcaaaatcaagaattgtctttgtgttgttctagcacatgtcagagcgg |
34305123 |
T |
|
| Q |
209 |
tggtggaacagaaaaggtggtgaaaaaacattcaccatggaggcaaattgatgaatttgataatgatgttagtttttcatgcaaatattgcgacgggaat |
308 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34305124 |
tggtgggacagaaaaggtggtgaaaaaacattcactatggaggcaaattgatgaatttgataatgatgttagtttttcatgcaaatattgcgacgggaat |
34305223 |
T |
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| Q |
309 |
catgaattgggtttattttgtaagttgtttcaagtctaatta |
350 |
Q |
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| T |
34305224 |
catgaattgggtttattttgtaagttgtttcaagtctaatta |
34305265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 31001223 - 31001155
Alignment:
| Q |
116 |
gaagtcatttattaaaagcatgtggttgagaaattcggtggtggctcaaaatcaagaattgtctttgtg |
184 |
Q |
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| T |
31001223 |
gaagtcttttattcaaagcatgtgagtgaaaaatcatgtggttgttcaaaatcaagaattgtctttgtg |
31001155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 347
Target Start/End: Original strand, 14573055 - 14573384
Alignment:
| Q |
9 |
ttgatggctaatgctgaaaatggagaagaaagaaaattagggtttgatctctttggtgaactgaaaaattcatcgtgcattagtcttgtgagttgcagga |
108 |
Q |
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| T |
14573055 |
ttgatggctaattgtgaagacgaagaaggaagaaaacttggttatgatctctttggtgaattgaaaaattccacatgcattagtattacaag------ga |
14573148 |
T |
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| Q |
109 |
agagagtgaagtcatttattaaaagcatgtggttgagaaattcggtggtggctcaaaatcaagaattgtctttgtgttgttctagcacatgtcagagcgg |
208 |
Q |
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| T |
14573149 |
agagggtgaagtcttttattcaaagcatgtgggtgaaaaatcatgtggtggttcaaaatcaagcagtgtctttgtgttgttctagcacatgtcagagc-- |
14573246 |
T |
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| Q |
209 |
tggtggaacagaaaaggtggtgaaaaaacattcaccatggaggcaaattgatgaatttgataat---gatgttagtttttcatgcaaatattgcgacggg |
305 |
Q |
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| T |
14573247 |
-cgtgggacaatgaaggtggtgaagaatcattcaacat---ggtctgttgatgaatttgataatgaagatgttggtgtttcatgcaaatattgcgacgga |
14573342 |
T |
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| Q |
306 |
aatcatgaattgggtttattttgtaagttgtttcaagtctaa |
347 |
Q |
| |
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||| |||||||| |||||||||||||| ||||||| |||||| |
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| T |
14573343 |
aattatgaattgagtttattttgtaagatgtttcacgtctaa |
14573384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 9 - 199
Target Start/End: Original strand, 49666307 - 49666497
Alignment:
| Q |
9 |
ttgatggctaatgctgaaaatggagaagaaagaaaattagggtttgatctctttggtgaactgaaaaattcatcgtgcattagtcttgtgagttgcagga |
108 |
Q |
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|||||||||||| ||| ||| ||||| ||||||| | |||||||||||||||||||| |||| ||||| | |||||| | ||||| |||| || | |
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| T |
49666307 |
ttgatggctaattgtgatgatgaagaaggaagaaaacttgggtttgatctctttggtgagttgaagaattccacaggcattactattgtgggttgtagaa |
49666406 |
T |
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| Q |
109 |
agagagtgaagtcatttattaaaagcatgtggttgagaaattcggtggtggctcaaaatcaagaattgtctttgtgttgttctagcacatg |
199 |
Q |
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| T |
49666407 |
agagggtgaagtcttttattcaaagcatgtgggtgaagaatgttgtggtggctcaaaatcaaggactctctttgtgttcttctagcacatg |
49666497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 50911734 - 50911658
Alignment:
| Q |
123 |
tttattaaaagcatgtggttgagaaattcggtggtggctcaaaatcaagaattgtctttgtgttgttctagcacatg |
199 |
Q |
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|||||| ||||||||||| ||| ||| |||||| ||| |||||||| |||||||||||||| || ||||||||| |
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| T |
50911734 |
tttattcaaagcatgtgggtgaagaatgttgtggtgtctccaaatcaaggattgtctttgtgttcttttagcacatg |
50911658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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