View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1248Eco24 (Length: 612)
Name: NF1248Eco24
Description: NF1248-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248Eco24 |
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Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 176 - 611
Target Start/End: Complemental strand, 1040148 - 1039713
Alignment:
| Q |
176 |
cattatgcatggaaggaagagtcacaattaagtcaaaatctaaaggatgatatgataacactagagagtgcaacaaatttagtttccaaggaaaaagtga |
275 |
Q |
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| T |
1040148 |
cattatgcatggaaggaagagtcacaattaagtcaaaatctaaaggatgatatgataacactagagagtgcaacaaatttagtttccaaggaaaaagtga |
1040049 |
T |
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| Q |
276 |
aggagaatacaaatagagaaagcagcatgcttgataaattaaggtcattcaagaacttgaatgataataatgatgacaaaagtgaatttcatgcagttgg |
375 |
Q |
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| T |
1040048 |
aggagaatacaaatagagaaagcagcatgcttgataaattaaggtcattcaagagcttgaatgataataatgatgacaaaagtgaatttcatgcagttgg |
1039949 |
T |
|
| Q |
376 |
tgaaaatgaaaagatgagtgaagaaagagcaaaccctttttcacaagctattagatggaatccacaaaggtctcaaacaaatcctacaaatagaacatat |
475 |
Q |
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| T |
1039948 |
tgaaaatgaaaagatgagtgaagaaagagcaaaccctttttcacaagctattagatggaatccacaaaggtctcaaacaaatcctacaaatagaacatat |
1039849 |
T |
|
| Q |
476 |
tttccaaagaaaatgcatacacatcatcaacatttggattggaagatgatgtcagtgaggacccgatgagcacactaatgaataggtatttttgaaaacc |
575 |
Q |
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| T |
1039848 |
tttccaaagaaaatacatacacatcatcaacatttggattggaagatgatgtcagtgaggacccgatgagcacactaatgaataggtatttttgaaaacc |
1039749 |
T |
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| Q |
576 |
ggatcgaactagaaattataaggttcttcaattggt |
611 |
Q |
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| T |
1039748 |
ggatcgaactagaaattataaggttcttcaattggt |
1039713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 1040316 - 1040207
Alignment:
| Q |
8 |
gaaagaagaaggaacaaatatgctgctgctgctgttctacaagctttggaattagcatcttttgagataagtaaatactcaaatcataagcaaaaggatg |
107 |
Q |
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| T |
1040316 |
gaaagaagaaggaacaaatatgctgctgctgctgttctacaagctttggaattagcatcttttgagataagtaaatactcaaatcataagcaaaaggatg |
1040217 |
T |
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| Q |
108 |
tagtaattcc |
117 |
Q |
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|||||||||| |
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| T |
1040216 |
tagtaattcc |
1040207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 14685437 - 14685403
Alignment:
| Q |
80 |
aaatactcaaatcataagcaaaaggatgtagtaat |
114 |
Q |
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| T |
14685437 |
aaatactcaaatcataaacaaaaggatgtagtaat |
14685403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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