View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1248Eco25 (Length: 220)
Name: NF1248Eco25
Description: NF1248-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248Eco25 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 33579843 - 33579634
Alignment:
| Q |
8 |
agaagtagctagggctatgaagcaccaagttaggatcatgacataagaatgacccggatttagatctcacgttttccacatcggaggtctaatcaatatc |
107 |
Q |
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| T |
33579843 |
agaagtagctagggctatgaagcaccaagttaggatcatgacataagaatgacccggatttagatctcacgttttccacatcagacgtctaatcaacatc |
33579744 |
T |
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| Q |
108 |
acaataggcctgcaaacttgagggagacaaaggagaagcatcttgcaaaactaaatcatgatccagagccattgctttcagatatttcatagttatcttt |
207 |
Q |
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| T |
33579743 |
acaataggcctgcaaacttgagggagacaaaggagaagcatcttgcaaaactaaatcatgatccagagccattgctttcagatatttcatagttatcttt |
33579644 |
T |
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| Q |
208 |
cgtgtaattg |
217 |
Q |
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|||| ||||| |
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| T |
33579643 |
cgtgcaattg |
33579634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 177
Target Start/End: Original strand, 10542736 - 10542904
Alignment:
| Q |
9 |
gaagtagctagggctatgaagcaccaagttaggatcatgacataagaatgacccggatttagatctcacgttttccacatcggaggtctaatcaatatca |
108 |
Q |
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| T |
10542736 |
gaagtggctggggctatgaaccaccaagttaggaccaagacataagaatgccccggaagtcgacctcacattatctacatcagaggctgaatcaacatca |
10542835 |
T |
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| Q |
109 |
caataggcctgcaaacttgagggagacaaaggagaagcatcttgcaaaactaaatcatgatccagagcc |
177 |
Q |
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| T |
10542836 |
caatatgcctgcaaacatgtgggagacaaaggagaagcatcttgcaaaactaaatcatgattcagagcc |
10542904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 98 - 192
Target Start/End: Complemental strand, 9082710 - 9082616
Alignment:
| Q |
98 |
aatcaatatcacaataggcctgcaaacttgagggagacaaaggagaagcatcttgcaaaactaaatcatgatccagagccattgctttcagatat |
192 |
Q |
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| T |
9082710 |
aatcaacatcacaataggcctacaaacttgggggagacaaagggtaagcatcctgcagaactaaaccatgatccagagcctttcctttgagatat |
9082616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 27965673 - 27965762
Alignment:
| Q |
85 |
acatcggaggtctaatcaatatcacaataggcctgcaaacttgagggagacaaaggagaagcatcttgcaaaactaaatcatgatccaga |
174 |
Q |
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| T |
27965673 |
acatcagaggtccaatcaacatcacaataggcttgcaaacttgtggaagacaaaggagaagcattacccacaactaaaccatgatccaga |
27965762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 9077445 - 9077354
Alignment:
| Q |
85 |
acatcggaggtctaatcaatatcacaataggcctgcaaacttgagggagacaa-aggagaagcatcttgcaaaactaaatcatgatccagag |
175 |
Q |
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| T |
9077445 |
acatcagaggtcaaatcaacatcacaataggcctgcaaacatgggggagaaaatagggtaaacatcctgcagaactaaaccaagatccagag |
9077354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 17733897 - 17733947
Alignment:
| Q |
8 |
agaagtagctagggctatgaagcaccaagttaggatcatgacataagaatg |
58 |
Q |
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||||||| ||||||||||||| ||||||||||||| || |||||||||||| |
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| T |
17733897 |
agaagtatctagggctatgaatcaccaagttaggaccaagacataagaatg |
17733947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 18489375 - 18489425
Alignment:
| Q |
8 |
agaagtagctagggctatgaagcaccaagttaggatcatgacataagaatg |
58 |
Q |
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||||||| ||||||||||||| ||||||||||||| || |||||||||||| |
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| T |
18489375 |
agaagtatctagggctatgaatcaccaagttaggaccaagacataagaatg |
18489425 |
T |
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