View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1248Eco27 (Length: 725)

Name: NF1248Eco27
Description: NF1248-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1248Eco27
NF1248Eco27
[»] chr8 (1 HSPs)
chr8 (8-723)||(30841934-30842650)


Alignment Details
Target: chr8 (Bit Score: 631; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 8 - 723
Target Start/End: Original strand, 30841934 - 30842650
Alignment:
Q  8 cttctatatctatataattatgcttctctccagaaaacaaactcgagaaagcaaaattgaaatccacttccaattctaaactaaactctgcataatcata 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30841934 cttctatatctatataattatgcttctctccagaaaacaaactagagaaagcaaaattgaaatccacttccaattctaaactaaactctgcataatcaaa 30842033  T
Q  108 atcatctttcaaaatccaaattctaacaacnnnnnnntggatttatcatcaccgtcgtcgccatcattatcacgatcaacggaagatgcagtagaagaaa 207  Q
    ||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30842034 atcatctttcaaaatccaaattctaacaacaaaaaaatggatttatcatcaccgtcgtcgccatcattatcacgatcaacagaagatgcagtagaagaaa 30842133  T
Q  208 taatgaaaactcacagatcattaccggcaaggccaagaacagaagaagttgaagcggccctaacggtggttgaaaacgcagacaaagaagaattgtcgag 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |    
T  30842134 taatgaaaactcacagatcattaccggcaaggccaagaacagaagaagttgaagcagccctaacggtggttgaaaacgcagacaaagaagaatcgtcggg 30842233  T
Q  308 actagaagtattttcttcatcatcatcgtctagaaaatccaaaggttcttcttccatgtcggaagagcttttaacaattttacaagagatacggaaaagt 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30842234 actagaagtattttcttcatcatcatcgtctagaaaatccaaaggttcttcttccatgtcggaagagcttttaacaattttacaagagatgcggaaaagt 30842333  T
Q  408 attgtgtctttcgaatgcaaagagaaaaagagagatgctcttaaactcttagaacacgaaaaagttcatgttctatttgatgatttcattctcaaagctt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  30842334 attgtgtctttcgaatgcaaagagaaaaagagagatgctcttaaactcttagaactcgaaaaagttcatgttctgtttgatgatttcattctcaaagctt 30842433  T
Q  508 ctaattgcatttcgagttctaataagtcccgtgatgctgcttcttcttcttcttccaagaattttgtttcttcttcgaatttattcgataaagaaggtgt 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30842434 ctaattgcatttcgagttctaataagtcccgtgatgctgcttcttcttcttcttccaagaattttgtttcttcttcgagtttattcgataaagaaggtgt 30842533  T
Q  608 cgagattaaggagaagaagggttcaaagttagcattatttaccanggatgacagttatttggtgaataataaggctatgtctacattc-agtttaatact 706  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30842534 cgagattaaggagaagaagggttcaaagttagcattatttactaaggatgacagttatttggtgaataataaggctatgtctacattcaagtttaatact 30842633  T
Q  707 gangcttangtaattgg 723  Q
    || ||||| | ||||||    
T  30842634 gatgcttatgcaattgg 30842650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University