View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1248Eco3 (Length: 283)
Name: NF1248Eco3
Description: NF1248-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248Eco3 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 8 - 280
Target Start/End: Complemental strand, 4971570 - 4971298
Alignment:
| Q |
8 |
aaggtaacaagatcctgcacacaaaattaaatttatggtatctatctaatagtactatatataacagaatcctacattgaaagatgatttccttttaaaa |
107 |
Q |
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| T |
4971570 |
aaggtaacaagatcctgcacacaaaattaaatttatggtatctatctaatagtactatatataacagaatcctacattgaaagatgatttccttttaaaa |
4971471 |
T |
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| Q |
108 |
aatgcatatttgttagaaaaatgcatattctaacagaagaacatcaatattagattccttacagagattttaagtgacttagtttcccaagctcaggagc |
207 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4971470 |
aatgcacatttgttagaaaaatgcatattctaacagaagaacatcaatattagattccttacagagattttaagtgacttagtttcccaagctcaggagc |
4971371 |
T |
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| Q |
208 |
caatgtcccttccaatgatagcccatttaggtccctacaagaacacaagtcatactattcagtactacaattg |
280 |
Q |
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| T |
4971370 |
caatgtcccttccaatgatagcccatttaggtccctacaagaacacaagtcatactattcagtactacaattg |
4971298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 8 - 280
Target Start/End: Complemental strand, 4989479 - 4989207
Alignment:
| Q |
8 |
aaggtaacaagatcctgcacacaaaattaaatttatggtatctatctaatagtactatatataacagaatcctacattgaaagatgatttccttttaaaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4989479 |
aaggtaacaagatcctgcacacaaaattaaatttatggtatctatctaatagtactatatataacagaatcctacattgaaagatgatttccttttaaaa |
4989380 |
T |
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| Q |
108 |
aatgcatatttgttagaaaaatgcatattctaacagaagaacatcaatattagattccttacagagattttaagtgacttagtttcccaagctcaggagc |
207 |
Q |
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| T |
4989379 |
aatgcacatttgttagaaaaatgcatattctaacagaagaacatcaatattagattccttacagagattttaagtgacttagtttcccaagctcaggagc |
4989280 |
T |
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| Q |
208 |
caatgtcccttccaatgatagcccatttaggtccctacaagaacacaagtcatactattcagtactacaattg |
280 |
Q |
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| T |
4989279 |
caatgtcccttccaatgatagcccatttaggtccctacaagaacacaagtcatactattcagtactacaattg |
4989207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 250
Target Start/End: Original strand, 35835005 - 35835092
Alignment:
| Q |
163 |
tccttacagagattttaagtgacttagtttcccaagctcaggagccaatgtcccttccaatgatagcccatttaggtccctacaagaa |
250 |
Q |
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|||||||||||||||||||||| | ||||||||||| | ||||| ||||||||||||||||||| | |||||||||||||| |||||| |
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| T |
35835005 |
tccttacagagattttaagtgattaagtttcccaagatgaggagtcaatgtcccttccaatgattggccatttaggtccctgcaagaa |
35835092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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