View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1248Eco4 (Length: 637)

Name: NF1248Eco4
Description: NF1248-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1248Eco4
NF1248Eco4
[»] chr3 (1 HSPs)
chr3 (10-634)||(49483403-49484027)


Alignment Details
Target: chr3 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 10 - 634
Target Start/End: Original strand, 49483403 - 49484027
Alignment:
Q  10 aacatggtggcaaaaccgatgcaaaatggagcnnnnnnncatcaggtgccaacaccagaaagaaacctaaattcaggacccagtaactatgttctcagag 109  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49483403 aacatggtggcaaaaccgatgcaaaatggagcaaaaaaacatcaggtgccaacaccagaaagaaacctaaattcaggacccagtaactatgttctcagag 49483502  T
Q  110 ataatcagtcattccaaaagcagcatcccgtcaacaggatgccnnnnnnntctttcaacagatttcctttcaattataaggaaacctgcaaaaataaaga 209  Q
    |||||||||||||| ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49483503 ataatcagtcattctaaaagcagcatcccgtcaacaggatgccaaaaaaatctttcaacagatttcctttcaattataaggaaacctgcaaaaataaaga 49483602  T
Q  210 ttgaacaactgtatgctctggaaaaagagaactgggtactgcgacaaccaagacccaccgataactgatggacccaaaaacactacctcgccaacactga 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49483603 ttgaacaactgtatgctctggaaaaagagaactgggtactgcgacaaccaagacccaccgataactgatggacccaaaaacactacctcgccaacactga 49483702  T
Q  310 taataaaatctggagctcaggctacccagactttgcggtatagatatcaaggctacctgctcagaagaggatgtcacacatccagagatgttccacaagc 409  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49483703 taataaaatctggagctcgggctacccagactttgcggtatagatatcaaggctacctgctcagaagaggatgtcacacatccagagatgttccacaagc 49483802  T
Q  410 ttgttaactgtgcggctgctgatcgacttgcaatttttgatatttaatccctcgagggaatcacccaattttttcaaagcagacaagctcttgtttgaaa 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49483803 ttgttaactgtgcggctgctgatcgacttgcaatttttgatatttaatccctcgagggaatcacccaattttttcaaagcagacaagctcttgtttgaaa 49483902  T
Q  510 ccaatgagcaacctgccaaagaaagtacatccagattgaacaggactccacgagtaagggcagaaatccctgcatcggtggttgcacactcggaaacatc 609  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  49483903 ccaatgagcaacctgccaaagaaagtacatccagattgaacaggactccacgagtaagggcagaaatccctgcatcggtgattgcacactcggaaacatc 49484002  T
Q  610 aagatcactcaagacaatgtaattg 634  Q
    ||||||||||||||||||| |||||    
T  49484003 aagatcactcaagacaatgcaattg 49484027  T

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