View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1248Eco5 (Length: 490)
Name: NF1248Eco5
Description: NF1248-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248Eco5 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 8 - 487
Target Start/End: Original strand, 32738816 - 32739288
Alignment:
| Q |
8 |
tgctcttctttgattgagtctatgttttgactggaaaagaagcagatggtcgaatttgctaaatttcttggtactgcctttagtgtgtataattatttag |
107 |
Q |
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| T |
32738816 |
tgctcttctttgattgagtctatgttttgactggaaaagaagcagatggtcgaatttgctaaatttcttggtactgcctttagtgtgtataattatttag |
32738915 |
T |
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| Q |
108 |
ctgagggggaataatgatatacatagtaatttgtnnnnnnnnnggtaacatatacataaaatggaatttaatttttcattttacacaaacacttaatcaa |
207 |
Q |
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| T |
32738916 |
ccgagggggaataatgatatacatattaatttgtaaaaaaaaaggtaacatatacattaaatggaatttaatttttcattttacacaaacatttaatcaa |
32739015 |
T |
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| Q |
208 |
aagaatgggcgtaatattttttattttggttttagggtttagggttatgcttccaaaaccaaaaggngtattacgttttcacctccgatgactcgtgttc |
307 |
Q |
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| T |
32739016 |
aagaatgggcgtaatattttt-attttggtttta-------gggttatgcttccaaaaccaaaaggcgtattacgttttcatctccgacgactcgtgttc |
32739107 |
T |
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| Q |
308 |
gtcgcattccctactgtctcttgtccgtgttgttggtgagttcatggcttcattgtcaatctttcatgtttttcaaagtgatgacaatggagaaaaggaa |
407 |
Q |
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| T |
32739108 |
gtcgcattccctaatgtctcttgtccgtgttgttggtgtgttcatggcttcatcgtcaatctttcatgtttttcaaagtgatgacaatggagaaaaggaa |
32739207 |
T |
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| Q |
408 |
gaacaattctagttattgctttattctaggggtgtcgtctcattacact-ccctcgttaattgattgtttcgtagtaattg |
487 |
Q |
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| T |
32739208 |
gaacaattctagttattgctttattataggggtgtcgtctcattacactgccctcgttaattgattgtttcgtagcaattg |
32739288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 32741909 - 32742019
Alignment:
| Q |
8 |
tgctcttctttgattgagtctatgttttgactggaaaa-gaagcagatggtcgaatttgctaaatttcttggtactgcctttagtgtgtataattattta |
106 |
Q |
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||||||||||||||||||||||||||||| | |||||| |||| |||||||||||||||| ||||||||||| ||||||||||| || |||||||||||| |
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| T |
32741909 |
tgctcttctttgattgagtctatgttttgtccggaaaaagaagtagatggtcgaatttgccaaatttcttggcactgcctttagggtatataattattta |
32742008 |
T |
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| Q |
107 |
gctgaggggga |
117 |
Q |
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| T |
32742009 |
gcttaggggga |
32742019 |
T |
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