View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1248_high_1 (Length: 481)
Name: NF1248_high_1
Description: NF1248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 30 - 322
Target Start/End: Complemental strand, 41675875 - 41675583
Alignment:
| Q |
30 |
aggacttaccacatgaaggttgtaggcttgtacgttttccaatgtagatctaaaactacttaaaatggtaagttgaagccattgaagagcataagctatt |
129 |
Q |
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| T |
41675875 |
aggacttaccacatgaaggttgtaggcttgtacgttttccaatgtagatctaaaactacttaaaatggtaagttgaagccattgaagagcataagctatt |
41675776 |
T |
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| Q |
130 |
aagctctatcaaaaagtagacccttttccttcacaacacacagagagcaaaacagaactatatgtatatgcaacatatataatcaaacatagaatatgat |
229 |
Q |
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| T |
41675775 |
aagctctatcaaaaagtagacccttttccttcacaacacacagagagcaaaacagaactatatgtatatgcaacatatataatcaaacatagaatatgat |
41675676 |
T |
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| Q |
230 |
aaatattaatctgaagtttacttggatgtgtatataatttttcaccaatgtataaatctaataactcactttagttaactcttaattacaatc |
322 |
Q |
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| T |
41675675 |
aaatattaatctgaagtttacttggatgtgtatataatttttcaccaatgtataaatctaataactcactttagttaactcttaattacaatc |
41675583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 389 - 474
Target Start/End: Complemental strand, 41675516 - 41675431
Alignment:
| Q |
389 |
tgtccaagatgcaacaatacatgtgaaatctaaacaatgaatccatgcaatattgcaatagacatgttcttctctagcctatgcta |
474 |
Q |
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| T |
41675516 |
tgtccaagatgcaacaatacatgtgaaatctaaacaatgaatccatgcaatattgcaatagacatgttcttctctagcctatgcta |
41675431 |
T |
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