View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1248_high_10 (Length: 324)

Name: NF1248_high_10
Description: NF1248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1248_high_10
NF1248_high_10
[»] chr4 (4 HSPs)
chr4 (30-315)||(21820466-21820748)
chr4 (41-287)||(12189931-12190177)
chr4 (150-280)||(8910274-8910404)
chr4 (213-283)||(5716617-5716687)
[»] chr3 (2 HSPs)
chr3 (30-278)||(13292956-13293204)
chr3 (87-278)||(13362063-13362255)
[»] chr1 (2 HSPs)
chr1 (60-289)||(27518535-27518764)
chr1 (50-218)||(22625721-22625888)
[»] chr7 (5 HSPs)
chr7 (155-280)||(20051981-20052106)
chr7 (41-280)||(5760765-5761004)
chr7 (151-284)||(4447882-4448015)
chr7 (153-211)||(18085795-18085853)
chr7 (157-214)||(8969531-8969587)
[»] chr5 (1 HSPs)
chr5 (48-253)||(31217283-31217488)
[»] chr6 (3 HSPs)
chr6 (73-280)||(23602128-23602335)
chr6 (78-271)||(10480776-10480969)
chr6 (76-220)||(19217562-19217706)
[»] chr8 (2 HSPs)
chr8 (151-274)||(17931805-17931928)
chr8 (153-280)||(24278435-24278562)
[»] scaffold0412 (1 HSPs)
scaffold0412 (153-280)||(841-967)
[»] chr2 (1 HSPs)
chr2 (48-105)||(25917552-25917609)


Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 30 - 315
Target Start/End: Complemental strand, 21820748 - 21820466
Alignment:
Q  30 ttcaagtcccatgcttcttgaatggttgttacctttggtttgaacttggcaggaagactcctaagaatcttcttgatataatcaggtattgtatatcttt 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||| |||||||||||    
T  21820748 ttcaagtcccatgcttcttgaatggttgttacctttggtttgaacttggcaggaagactcctaagaatctt---gatataatcaggtactgtatatcttt 21820652  T
Q  130 tactcaaaacttgaaggtctgatacaagagtttgaaaccttgaatgcatggtttcaatatcttaattttccttcattttgaaaagctcatattggtgaac 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21820651 tactcaaaacttgaaggtctgatacaagagtttgaaaccttgaatgcatggtttcaatatcttaattttccttcattttgaaaagctcatattggtgaac 21820552  T
Q  230 caactggttggccttaacctcttttacctgttgatttccttcataggtagaacacgatgactcgaaaaaggcttttgtagaataat 315  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21820551 caactggttggcattaacctcttttacctgttgatttccttcataggtagaacacgatgactcgaaaaaggcttttgtagtataat 21820466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 41 - 287
Target Start/End: Original strand, 12189931 - 12190177
Alignment:
Q  41 tgcttcttgaatggttgttacctttggtttgaacttggcaggaagactcctaagaatcttcttgatataatcaggtattgtatatcttttactcaaaact 140  Q
    |||||| ||||||||||| ||||||| | ||||| | ||||||||| ||| ||||||||| |||| ||  ||||| || |||||  ||||| ||  |||     
T  12189931 tgcttcctgaatggttgtaacctttgatctgaacctagcaggaagattccgaagaatctttttgacatggtcaggaatagtataaattttattctgaacc 12190030  T
Q  141 tgaaggtctgatacaagagtttgaaaccttgaatgcatggtttcaatatcttaattttccttcattttgaaaagctcatattggtgaaccaactggttgg 240  Q
    |||||| |  |||||||||| ||||||||||||| ||||||||||||||||| ||  ||| ||||||| ||||| |||||||| |||||||| ||||| |    
T  12190031 tgaaggacaaatacaagagtctgaaaccttgaatacatggtttcaatatcttcatcctccctcattttaaaaagatcatattgatgaaccaattggttag 12190130  T
Q  241 ccttaacctcttttacctgttgatttccttcataggtagaacacgat 287  Q
    | ||| | |  ||  | ||||| ||| ||||||| ||||||||||||    
T  12190131 cattatcttgcttcccttgttggtttacttcatatgtagaacacgat 12190177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 150 - 280
Target Start/End: Original strand, 8910274 - 8910404
Alignment:
Q  150 gatacaagagtttgaaaccttgaatgcatggtttcaatatcttaattttccttcattttgaaaagctcatattggtgaaccaactggttggccttaacct 249  Q
    |||| |||||||| |||||||||||| |||| ||||||||||| ||  | ||||||| |||| ||||||||||||||||| | | | || ||| |  |||    
T  8910274 gatataagagtttcaaaccttgaatgtatggcttcaatatcttcatccttcttcattctgaagagctcatattggtgaacaagcggatttgccatggcct 8910373  T
Q  250 cttttacctgttgatttccttcataggtaga 280  Q
    |||| || ||||||||||||||||| |||||    
T  8910374 ctttgacttgttgatttccttcataagtaga 8910404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 283
Target Start/End: Original strand, 5716617 - 5716687
Alignment:
Q  213 agctcatattggtgaaccaactggttggccttaacctcttttacctgttgatttccttcataggtagaaca 283  Q
    |||||||| || | |||||||  ||| |||||| ||||||| || ||||| ||||||||||||||||||||    
T  5716617 agctcatactgcttaaccaacaagttagccttagcctctttaacttgttggtttccttcataggtagaaca 5716687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 30 - 278
Target Start/End: Complemental strand, 13293204 - 13292956
Alignment:
Q  30 ttcaagtcccatgcttcttgaatggttgttacctttggtttgaacttggcaggaagactcctaagaatcttcttgatataatcaggtattgtatatcttt 129  Q
    ||||| |||| |||||| |||||| |||| ||||||||| | ||| |||||||| |  |||||||||||||||||| || ||||||||   |||| ||||    
T  13293204 ttcaaatcccttgcttcgtgaatgcttgtaacctttggtctaaacatggcaggaggg-tcctaagaatcttcttgacatgatcaggtacattataacttt 13293106  T
Q  130 ta-ctcaaaacttgaaggtctgatacaagagtttgaaaccttgaatgcatggtttcaatatcttaattttccttcattttgaaaagctcatattggtgaa 228  Q
    |  |||||||| | |||| | ||||||| | || |||||||||||| |||||||| |||||||| || || ||||||||| ||||||||||| || ||||    
T  13293105 ttgctcaaaacctaaaggccagatacaaaaattagaaaccttgaatacatggttttaatatcttcatctttcttcattttaaaaagctcatactgatgaa 13293006  T
Q  229 ccaactggttggccttaacctcttttacctgttgatttccttcataggta 278  Q
    | |||||||| |||||| |||||||||| || || ||||| | |||||||    
T  13293005 ctaactggttagccttagcctcttttacttgctggtttccctaataggta 13292956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 87 - 278
Target Start/End: Original strand, 13362063 - 13362255
Alignment:
Q  87 ctcctaagaatcttcttgatataatcaggtattgtatatctttta-ctcaaaacttgaaggtctgatacaagagtttgaaaccttgaatgcatggtttca 185  Q
    ||||||||||||||||||| || ||||||||   |||| |||||  |||||||| | |||| ||||||||| | || |||| ||||||| |||||||| |    
T  13362063 ctcctaagaatcttcttgacatgatcaggtacattataactttttgctcaaaacctaaaggcctgatacaaaaattagaaagcttgaatacatggtttta 13362162  T
Q  186 atatcttaattttccttcattttgaaaagctcatattggtgaaccaactggttggccttaacctcttttacctgttgatttccttcataggta 278  Q
    ||||||| || || ||| ||||| ||||||||||| || ||||| |||| ||| |||||| |||||||||| ||||| ||||| |||||||||    
T  13362163 atatcttcatctttctttattttaaaaagctcatactgatgaactaactagttagccttagcctcttttacttgttggtttccctcataggta 13362255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 60 - 289
Target Start/End: Complemental strand, 27518764 - 27518535
Alignment:
Q  60 acctttggtttgaacttggcaggaagactcctaagaatcttcttgatataatcaggtattgtatatcttttactcaaaacttgaaggtctgatacaagag 159  Q
    ||||||||| ||||| ||| ||||||||| |||  | ||||||||| ||  ||||| |   ||||||||||| ||| ||| |||||| | ||||||||||    
T  27518764 acctttggtctgaacctggtaggaagacttctagtattcttcttgacatggtcaggaacaatatatcttttattcataacctgaaggccagatacaagag 27518665  T
Q  160 tttgaaaccttgaatgcatggtttcaatatcttaattttccttcattttgaaaagctcatattggtgaaccaactggttggccttaacctcttttacctg 259  Q
    ||||||||||||||| |||| |||||||||||| ||  ||||||||||| ||||||||||| || || | ||  ||||| || ||| | || ||||||||    
T  27518664 tttgaaaccttgaatacatgatttcaatatcttcatcctccttcattttaaaaagctcataatgatgcatcagttggttagctttagcttcctttacctg 27518565  T
Q  260 ttgatttccttcataggtagaacacgatga 289  Q
     || ||||||||||||||||||||| ||||    
T  27518564 ctggtttccttcataggtagaacacaatga 27518535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 218
Target Start/End: Complemental strand, 22625888 - 22625721
Alignment:
Q  50 aatggttgttacctttggtttgaacttggcaggaagactcctaagaatcttcttgatataatcaggtattgtatatcttttactcaaaacttgaaggtct 149  Q
    ||||||||| ||||||  | |||| ||||||||||||||||||||||||||||||  ||  ||| | |   ||||| |||| |||  ||| ||||||  |    
T  22625888 aatggttgtaacctttactctgaatttggcaggaagactcctaagaatcttcttggcatg-tcatgaacattatatatttttctctgaacctgaaggctt 22625790  T
Q  150 gatacaagagtttgaaaccttgaatgcatggtttcaatatcttaattttccttcattttgaaaagctca 218  Q
    ||||||||||| |||||| |||||| ||||||||||||||||| || ||||||| |||| |||||||||    
T  22625789 gatacaagagtctgaaactttgaatacatggtttcaatatcttcatcttccttcgttttaaaaagctca 22625721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 280
Target Start/End: Original strand, 20051981 - 20052106
Alignment:
Q  155 aagagtttgaaaccttgaatgcatggtttcaatatcttaattttccttcattttgaaaagctcatattggtgaaccaactggttggccttaacctctttt 254  Q
    |||||||||||||||||||| ||||||||||||||||| ||  || ||||| |||||||||||| | |||| ||||| |||||| ||| || | || |||    
T  20051981 aagagtttgaaaccttgaatacatggtttcaatatcttgatcctctttcatcttgaaaagctcaaactggtaaaccagctggtttgccatagcttccttt 20052080  T
Q  255 acctgttgatttccttcataggtaga 280  Q
    ||||| ||||||||||| ||||||||    
T  20052081 acctgctgatttccttcgtaggtaga 20052106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 280
Target Start/End: Original strand, 5760765 - 5761004
Alignment:
Q  41 tgcttcttgaatggttgttacctttggtttgaacttggcaggaagactcctaagaatcttcttgatataatcaggtattgtatatcttttactcaaaact 140  Q
    |||||| ||||| |||||  |||||||| |||||||| ||||||||||||||||||||||||||| || || |||||    ||| || ||  ||||||||    
T  5760765 tgcttcctgaatagttgtagcctttggtctgaacttgacaggaagactcctaagaatcttcttgacatgattaggtagataataactctttttcaaaact 5760864  T
Q  141 tgaaggtctgatacaagagtttgaaaccttgaatgcatggtttcaatatcttaattttccttcattttgaaaagctcatattggtgaaccaactggttgg 240  Q
    |||||| |  | ||||| |||||||||||||| | ||| ||  ||||||||| || |||||||||||  || || ||||| || || | ||| ||||| |    
T  5760865 tgaaggccatacacaagggtttgaaaccttgagtacatagtgccaatatcttcatcttccttcatttgtaagagatcatactgatgtatcaattggttag 5760964  T
Q  241 ccttaacctcttttacctgttgatttccttcataggtaga 280  Q
    | ||| | || || |||||||| || ||||||||||||||    
T  5760965 ctttagcttcgttaacctgttggttcccttcataggtaga 5761004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 151 - 284
Target Start/End: Original strand, 4447882 - 4448015
Alignment:
Q  151 atacaagagtttgaaaccttgaatgcatggtttcaatatcttaattttccttcattttgaaaagctcatattggtgaaccaactggttggccttaacctc 250  Q
    |||||||||||| ||||||||||| ||| |||| |||||||| ||  ||||||||| | ||||| ||||| || || ||||| ||||| ||||| || ||    
T  4447882 atacaagagtttaaaaccttgaatacatagttttaatatcttcatcatccttcattctaaaaaggtcatactgatgcaccaattggttagccttcacttc 4447981  T
Q  251 ttttacctgttgatttccttcataggtagaacac 284  Q
     ||| | ||||| |||||||||||||||| ||||    
T  4447982 cttttcttgttggtttccttcataggtagcacac 4448015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 18085853 - 18085795
Alignment:
Q  153 acaagagtttgaaaccttgaatgcatggtttcaatatcttaattttccttcattttgaa 211  Q
    ||||| |||||||||||||||  ||| ||||||||||||| ||  ||||||||||||||    
T  18085853 acaagtgtttgaaaccttgaaaccatagtttcaatatcttcatcatccttcattttgaa 18085795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 8969587 - 8969531
Alignment:
Q  157 gagtttgaaaccttgaatgcatggtttcaatatcttaattttccttcattttgaaaag 214  Q
    |||||||||||||||||| | ||||||||||||||| || || |||||| ||||||||    
T  8969587 gagtttgaaaccttgaatac-tggtttcaatatcttcatctttcttcatcttgaaaag 8969531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 253
Target Start/End: Original strand, 31217283 - 31217488
Alignment:
Q  48 tgaatggttgttacctttggtttgaacttggcaggaagactcctaagaatcttcttgatataatcaggtattgtatatcttttactcaaaacttgaaggt 147  Q
    ||||||||||| ||||||||| ||||| | ||||||||| | |||||||||||||||| ||  ||||| |   ||||||||||| ||| ||| ||||       
T  31217283 tgaatggttgtaacctttggtctgaacctagcaggaagatttctaagaatcttcttgacatggtcaggaacaatatatcttttattcagaacctgaacac 31217382  T
Q  148 ctgatacaagagtttgaaaccttgaatgcatggtttcaatatcttaattttccttcattttgaaaagctcatattggtgaaccaactggttggccttaac 247  Q
      ||||||||||| ||||||||| |   ||||||||||||||||| || |||||||||| | |||||| ||||||| |||||||| | ||| | ||||||    
T  31217383 tagatacaagagtctgaaacctttataacatggtttcaatatcttcatattccttcattataaaaagcccatattgatgaaccaaatagttaggcttaac 31217482  T
Q  248 ctcttt 253  Q
     |||||    
T  31217483 ttcttt 31217488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 280
Target Start/End: Complemental strand, 23602335 - 23602128
Alignment:
Q  73 acttggcaggaagactcctaagaatcttcttgatataatcaggtattgtatatcttttactcaaaacttgaaggtctgatacaagagtttgaaaccttga 172  Q
    ||||||||| ||||||||| | ||||||||||| || ||||||| ||||||| || ||  |||||||||||||| ||||||| |  || |||||||||||    
T  23602335 acttggcagaaagactcctcaaaatcttcttgacatgatcaggtgttgtatagctcttggtcaaaacttgaaggcctgataccaaggtctgaaaccttga 23602236  T
Q  173 atgcatggtttcaatatcttaattttccttcattttgaaaagctcatattggtgaaccaactggttggccttaacctcttttacctgttgatttccttca 272  Q
       |||||||| | | |||| || |||||||||| |||| || ||||| || || ||||||  ||| | |||||| |||||||  |||||  |||| ||     
T  23602235 ggacatggttttattgtcttcatcttccttcattatgaagagatcataatgttggaccaacatgttagtcttaacttcttttatttgttggattccctcg 23602136  T
Q  273 taggtaga 280  Q
    ||||||||    
T  23602135 taggtaga 23602128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 271
Target Start/End: Original strand, 10480776 - 10480969
Alignment:
Q  78 gcaggaagactcctaagaatcttcttgatataatcaggtattgtatatcttttactcaaaacttgaaggtctgatacaagagtttgaaaccttgaatgca 177  Q
    ||||||||||||||||||||| |||||| || ||||||||    | | || ||  ||| ||| ||||| ||  |||||||||||||||||||| ||||||    
T  10480776 gcaggaagactcctaagaatcatcttgacatgatcaggtacatcaaagctcttcttcagaacctgaagatcatatacaagagtttgaaaccttaaatgca 10480875  T
Q  178 tggtttcaatatcttaattttccttcattttgaaaagctcatattggtgaaccaactggttggccttaacctcttttacctgttgatttccttc 271  Q
     |  ||||||||||| |   ||||||||| | || || ||||||||||||||||| || || |||||| ||| |||  | ||||||||||||||    
T  10480876 cgacttcaatatcttcaccctccttcattctaaagagttcatattggtgaaccaattgatttgccttagcctttttggcttgttgatttccttc 10480969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 220
Target Start/End: Complemental strand, 19217706 - 19217562
Alignment:
Q  76 tggcaggaagactcctaagaatcttcttgatataatcaggtattgtatatcttttactcaaaacttgaaggtctgatacaagagtttgaaaccttgaatg 175  Q
    ||||||| |||||||| ||||| ||||| | ||  ||| |||   |||| |||||  ||| ||||||||||||    |||||||||| |||||||||       
T  19217706 tggcagggagactccttagaatattcttcacatggtcacgtacaatataacttttgttcagaacttgaaggtcattcacaagagttttaaaccttgagaa 19217607  T
Q  176 catggtttcaatatcttaattttccttcattttgaaaagctcata 220  Q
    ||| ||||||||||||| ||||||||||||||| ||||| |||||    
T  19217606 cattgtttcaatatcttcattttccttcattttaaaaagatcata 19217562  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 151 - 274
Target Start/End: Complemental strand, 17931928 - 17931805
Alignment:
Q  151 atacaagagtttgaaaccttgaatgcatggtttcaatatcttaattttccttcattttgaaaagctcatattggtgaaccaactggttggccttaacctc 250  Q
    |||||||||| ||||||||||||  ||||||||||||||||  ||||||||||||| |  ||| ||||||||| |  |||||  |||| |||||| ||||    
T  17931928 atacaagagtctgaaaccttgaaaacatggtttcaatatctccattttccttcattctttaaacctcatattgtttgaccaaaaggttagccttagcctc 17931829  T
Q  251 ttttacctgttgatttccttcata 274  Q
    ||| |  ||||| |||||||||||    
T  17931828 tttcaattgttggtttccttcata 17931805  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 280
Target Start/End: Complemental strand, 24278562 - 24278435
Alignment:
Q  153 acaagagtttgaaaccttgaatgcatggtttcaatatcttaattttccttcattttgaaaagctcatattggtgaaccaactggttggccttaacctctt 252  Q
    |||||||||||||||||||| | |||| |||||||||||  || |||||||||| | || ||||||||||| || ||||| |||||  | ||| | ||||    
T  24278562 acaagagtttgaaaccttgagtacatgatttcaatatctccatcttccttcattctaaagagctcatattgatgtaccaattggttaactttagcttctt 24278463  T
Q  253 ttacctgttgatttccttcataggtaga 280  Q
    | ||||||||  | ||||||||||||||    
T  24278462 taacctgttggatcccttcataggtaga 24278435  T

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Target: scaffold0412 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0412
Description:

Target: scaffold0412; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 280
Target Start/End: Complemental strand, 967 - 841
Alignment:
Q  153 acaagagtttgaaaccttgaatgcatggtttcaatatcttaattttccttcattttgaaaagctcatattggtgaaccaactggttggccttaacctctt 252  Q
    |||||||||||||||||||||  ||||||||||| ||||| ||  || ||||| |||| |||||| || | ||||||||| ||||| |||||| | || |    
T  967 acaagagtttgaaaccttgaagacatggtttcaa-atctttatcatctttcatcttgacaagctcctactagtgaaccaattggtttgccttagcttcct 869  T
Q  253 ttacctgttgatttccttcataggtaga 280  Q
    | ||||| |||||| |||  ||||||||    
T  868 tcacctgctgattttctttgtaggtaga 841  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 25917609 - 25917552
Alignment:
Q  48 tgaatggttgttacctttggtttgaacttggcaggaagactcctaagaatcttcttga 105  Q
    ||||||||||||||||||||  ||||  |||||||| ||||||||| ||| |||||||    
T  25917609 tgaatggttgttacctttggaatgaatctggcaggatgactcctaaaaatattcttga 25917552  T

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