View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1248_high_11 (Length: 289)
Name: NF1248_high_11
Description: NF1248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 14819900 - 14819971
Alignment:
| Q |
103 |
ctatagtcgttgtataaattgataatttaatttaatacaacacccaccaccttgacactcgtgtcattcata |
174 |
Q |
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| T |
14819900 |
ctatagtcgttgtataaattgataatttaatttaatacaacacccaccaccttgacactcgtgtcattcata |
14819971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 15266900 - 15266971
Alignment:
| Q |
103 |
ctatagtcgttgtataaattgataatttaatttaatacaacacccaccaccttgacactcgtgtcattcata |
174 |
Q |
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| T |
15266900 |
ctatagtcgttgtataaattgataatttaatttaatacaacacccaccaccttgacactcgtgtcattcata |
15266971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 15273685 - 15273756
Alignment:
| Q |
103 |
ctatagtcgttgtataaattgataatttaatttaatacaacacccaccaccttgacactcgtgtcattcata |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15273685 |
ctatagtcgttgtataaattgataatttaatttaatacaacacccaccaccttgacactcgtgtcattcata |
15273756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 14820017 - 14820057
Alignment:
| Q |
220 |
tgaacgtggatctggaatccttggcagaagccacttctgga |
260 |
Q |
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| T |
14820017 |
tgaacgtggatctggaatccttggcagaagccacttctgga |
14820057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 15267017 - 15267057
Alignment:
| Q |
220 |
tgaacgtggatctggaatccttggcagaagccacttctgga |
260 |
Q |
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| T |
15267017 |
tgaacgtggatctggaatccttggcagaagccacttctgga |
15267057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 15273802 - 15273842
Alignment:
| Q |
220 |
tgaacgtggatctggaatccttggcagaagccacttctgga |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
15273802 |
tgaacgtggatctggaatccttggcagaagccacttctgga |
15273842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 103 - 174
Target Start/End: Complemental strand, 17502819 - 17502748
Alignment:
| Q |
103 |
ctatagtcgttgtataaattgataatttaatttaatacaacacccaccaccttgacactcgtgtcattcata |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17502819 |
ctatagtcgttgtataaattgataatttaatttaatacaacacccaccaccttgacactcgtgtcattcata |
17502748 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 17502702 - 17502662
Alignment:
| Q |
220 |
tgaacgtggatctggaatccttggcagaagccacttctgga |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17502702 |
tgaacgtggatctggaatccttggcagaagccacttctgga |
17502662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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