View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1248_high_3 (Length: 474)
Name: NF1248_high_3
Description: NF1248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 13 - 315
Target Start/End: Original strand, 2064469 - 2064771
Alignment:
| Q |
13 |
atactcaaacgatccaattgaataagaccttgaatcgccaccggtagtaacggcgtcgggattgggaagattgtttccacggcggcttatatttccgata |
112 |
Q |
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| T |
2064469 |
atactcaaacgatccaatcgaataagaccttgaatcgccaccggtagtaacggcgtcgggattgggaagattgtttccacggcggcttatatttccgata |
2064568 |
T |
|
| Q |
113 |
tcaactcggaaactgtctgaagaagttgatcggagaattttcgcgagatcagaatcggaagggagaatgctggagcgacataacggacatgaaagatttg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2064569 |
tcaactcggaaactgtctgaagaagttgatcggagaatttttgcgagatcagaatcggaagggagaatgctggcgcgacataacggacatgaaagatttg |
2064668 |
T |
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| Q |
213 |
aacggagccatgtgtcaatgcattcagcatggaaagcgtggcaacagagaggaagagaacggaggaggtcggagttacggaactttgataaacagacagc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2064669 |
aacggagccatgtgtcaatgcattcagcatggaaagcgtggcaacagagaggaagagaacggaggaggtcggagttacggaactttgataaacagacagc |
2064768 |
T |
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| Q |
313 |
gca |
315 |
Q |
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||| |
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| T |
2064769 |
gca |
2064771 |
T |
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