View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1248_high_7 (Length: 369)
Name: NF1248_high_7
Description: NF1248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 77 - 364
Target Start/End: Original strand, 11709850 - 11710137
Alignment:
| Q |
77 |
gttttgagcctgtctgttttgttcttgaacccttttctccattacatacttccactaaataacttatcatcagtggttatatcattattaaacttacttc |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11709850 |
gttttgagcctgtctgttttgttcttgaacccttttctccattacatacttccactaaataacttatcatcagtggttatatcattattaaacttacttc |
11709949 |
T |
|
| Q |
177 |
ttgatagttgccttacaacttgcacagtgaagtttgtcaaagtaaacaatatgtcagttagacttgtcatgagcttcctttatagattagcatggtttat |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11709950 |
ttgatagttgccttacaacttgcacagtgaagtttgtcaaagtaaacaatatgtcagttagacttgtcatgagcttcctttatagattagcatggtttat |
11710049 |
T |
|
| Q |
277 |
tgtctttgcaaactgnnnnnnnnnnnnnnnnnnngaaggaatttcaaactggtcacatattactaaaatgtatgtcatattcttggag |
364 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
11710050 |
tgtctttgcaaactgtttttttgcttttttttttgaaggaatttcaaactggtcacatattactaaaatgtatgtcattttgttggag |
11710137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 283
Target Start/End: Original strand, 11709278 - 11709398
Alignment:
| Q |
164 |
ttaaacttacttcttgatagttgccttacaacttgcacagtgaagtttgtcaaagtaaacaatatgtcagttagacttgt-catgagcttcctttataga |
262 |
Q |
| |
|
||||||||| |||||| |||||||||| ||||||||||| | |||||||| || ||||| || | |||||||||||||| || |||||| ||||||| |
|
|
| T |
11709278 |
ttaaacttatttcttgttagttgccttgcaacttgcacaataaagtttgttaaggtaaaaaagacatcagttagacttgtatattagcttcttttatagg |
11709377 |
T |
|
| Q |
263 |
ttagcatggtttattgtcttt |
283 |
Q |
| |
|
|||| |||| ||||||||||| |
|
|
| T |
11709378 |
ttagtatggcttattgtcttt |
11709398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 48846180 - 48846254
Alignment:
| Q |
6 |
agcctcttagtgttaaatgaagtactgctgctagaggaagctttgtttgtcgcaacatcattttcttcatggttttga |
83 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48846180 |
agcctcttagtgttcaatgaagt---gctgctagaggaagctttgtttgtcgcaacatcattttcttcatggttttga |
48846254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 7016338 - 7016264
Alignment:
| Q |
6 |
agcctcttagtgttaaatgaagtactgctgctagaggaagctttgtttgtcgcaacatcattttcttcatggttttga |
83 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7016338 |
agcctcttagtgttcaatgaagt---gctgctagaggaagctttgtttgtcgcaacatcattttcttcatggttttga |
7016264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 35378176 - 35378226
Alignment:
| Q |
6 |
agcctcttagtgttaaatgaagtactgctgctagaggaagctttgtttgtcgca |
59 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
35378176 |
agcctcttagtgttcaatgaagt---gctgctagaggcagctttgtttgtcgca |
35378226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University