View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1248_low_1 (Length: 494)
Name: NF1248_low_1
Description: NF1248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 85 - 303
Target Start/End: Original strand, 26047648 - 26047867
Alignment:
| Q |
85 |
ttggagaggaaatggggaagagaagaggaagggaaaccgaaggataggaagagattagcgagtgtgatttgttttctgtaattagatgtttgatgagaaa |
184 |
Q |
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| T |
26047648 |
ttggagaggaaatggggaagagaagaggaagggaaaccgaaggataggaagagattagcgagtgtgatttgttttctgtaatgagatgtttgatgagaaa |
26047747 |
T |
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| Q |
185 |
tggtggagaagctgttagttgaagatatggttcttctgagaataaacatgttgtttcttgtgagaaatgtgactgatactagttagtat-atatcagtca |
283 |
Q |
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| T |
26047748 |
tggtggagaagctgttagttgaagaaatggttcttctgagaataaacatattgtttcttgtgagaaatgtgactgatactagttagtataatatcagtca |
26047847 |
T |
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| Q |
284 |
gaaacagaaacagttacagc |
303 |
Q |
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| T |
26047848 |
gaaacagaaacagtgacagc |
26047867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 303 - 483
Target Start/End: Original strand, 26047907 - 26048087
Alignment:
| Q |
303 |
caattgattgattcttcttccaaccttctttctgcgaagtgatggcgtcttcctcattcttctattcacccaaccaccaacgtctcctatccttcacaaa |
402 |
Q |
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| T |
26047907 |
caattgattgattcttcttccaaccttctttctgcgaagtgatggcgtcttcctcattcttctattcacccaaccaccaacgtctcctatccttcacaaa |
26048006 |
T |
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| Q |
403 |
gcaaataacaacacacgtcaaccaatctcgtcatagagaagctttatcaatcttccaccacatgcacgcttcccttttcat |
483 |
Q |
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| T |
26048007 |
gcaaataacaacacacgtcaaccaatctcgtcacagagaagctttatcaatcttccaccacatgcactcttcccttttcat |
26048087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 19390163 - 19390094
Alignment:
| Q |
11 |
aactattagagttgttgccgatgactttgctcctactcattattgtatcggcatcatccattgggaccat |
80 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
19390163 |
aactattagagttgttgccgatgactttgctcctactcattattgcatcggcatcatccattgggaccat |
19390094 |
T |
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