View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1248_low_13 (Length: 326)
Name: NF1248_low_13
Description: NF1248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1248_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 5 - 313
Target Start/End: Complemental strand, 33695384 - 33695075
Alignment:
| Q |
5 |
aattggtccaacttagcatacaaccattgccacatctattaagacctgcaaaagtgcaagnnnnnnnnnnng-aatgaggagttatcaagtgaaaataga |
103 |
Q |
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| T |
33695384 |
aattggtccaccttagcctacaactctttccacatctattaagacctgcaaaattgcaagaaaaaataaaaataatgaggagttatccagtgaaaataga |
33695285 |
T |
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| Q |
104 |
aactatatattaatagttattgcaacatatagagatatgataaatatacaaaccagctagcttagggagtgctctccaacttccatggccatgttgctga |
203 |
Q |
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| T |
33695284 |
aactatatattaatagttattgcaacatatagagatataataaatatacaaaccagctagcttagggagtgctctccaacttccatggccatgttgctga |
33695185 |
T |
|
| Q |
204 |
atgtgttcaactagcttttgatcttcttcgggagtccaaggtcctttctttaggccactctcatcacaacatggggaccttcccattgtgtgttactatt |
303 |
Q |
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| T |
33695184 |
atgtgttcaactagcttttgatcttcttcaggagtccaaggtcctttctttaggccactctcatcacaacatggggaccttcccattgtgtgttactatt |
33695085 |
T |
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| Q |
304 |
attatttcct |
313 |
Q |
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||| |||||| |
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| T |
33695084 |
attctttcct |
33695075 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 30007235 - 30007186
Alignment:
| Q |
159 |
gctagcttagggagtgctctccaacttccatggccatgttgctgaatgtg |
208 |
Q |
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| T |
30007235 |
gctagctttggaagtgctctccaacttccatggccatgtttcttaatgtg |
30007186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 7898730 - 7898786
Alignment:
| Q |
228 |
tcttcgggagtccaaggtcctttctttaggccactctcatcacaacatggggacctt |
284 |
Q |
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| T |
7898730 |
tcttcaggggtccaaggtcctttcttaaggtcattctcatcacagcatggggacctt |
7898786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 1319411 - 1319478
Alignment:
| Q |
174 |
gctctccaacttccatggccatgttgctgaatgtgttcaactagcttttgatcttcttcgggagtcca |
241 |
Q |
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| T |
1319411 |
gctctccaacttccatggccatgtttctgaatgtgatccactaatattttatcttcttctggactcca |
1319478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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