View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1248_low_17 (Length: 289)

Name: NF1248_low_17
Description: NF1248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1248_low_17
NF1248_low_17
[»] chr7 (6 HSPs)
chr7 (103-174)||(14819900-14819971)
chr7 (103-174)||(15266900-15266971)
chr7 (103-174)||(15273685-15273756)
chr7 (220-260)||(14820017-14820057)
chr7 (220-260)||(15267017-15267057)
chr7 (220-260)||(15273802-15273842)
[»] chr5 (2 HSPs)
chr5 (103-174)||(17502748-17502819)
chr5 (220-260)||(17502662-17502702)


Alignment Details
Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 14819900 - 14819971
Alignment:
Q  103 ctatagtcgttgtataaattgataatttaatttaatacaacacccaccaccttgacactcgtgtcattcata 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14819900 ctatagtcgttgtataaattgataatttaatttaatacaacacccaccaccttgacactcgtgtcattcata 14819971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 15266900 - 15266971
Alignment:
Q  103 ctatagtcgttgtataaattgataatttaatttaatacaacacccaccaccttgacactcgtgtcattcata 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15266900 ctatagtcgttgtataaattgataatttaatttaatacaacacccaccaccttgacactcgtgtcattcata 15266971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 15273685 - 15273756
Alignment:
Q  103 ctatagtcgttgtataaattgataatttaatttaatacaacacccaccaccttgacactcgtgtcattcata 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15273685 ctatagtcgttgtataaattgataatttaatttaatacaacacccaccaccttgacactcgtgtcattcata 15273756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 14820017 - 14820057
Alignment:
Q  220 tgaacgtggatctggaatccttggcagaagccacttctgga 260  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14820017 tgaacgtggatctggaatccttggcagaagccacttctgga 14820057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 15267017 - 15267057
Alignment:
Q  220 tgaacgtggatctggaatccttggcagaagccacttctgga 260  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  15267017 tgaacgtggatctggaatccttggcagaagccacttctgga 15267057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 15273802 - 15273842
Alignment:
Q  220 tgaacgtggatctggaatccttggcagaagccacttctgga 260  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  15273802 tgaacgtggatctggaatccttggcagaagccacttctgga 15273842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 103 - 174
Target Start/End: Complemental strand, 17502819 - 17502748
Alignment:
Q  103 ctatagtcgttgtataaattgataatttaatttaatacaacacccaccaccttgacactcgtgtcattcata 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17502819 ctatagtcgttgtataaattgataatttaatttaatacaacacccaccaccttgacactcgtgtcattcata 17502748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 17502702 - 17502662
Alignment:
Q  220 tgaacgtggatctggaatccttggcagaagccacttctgga 260  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  17502702 tgaacgtggatctggaatccttggcagaagccacttctgga 17502662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University